Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00922 ATGGCTTTTACTTTAGGACAAGCATTTTCTCATATATTCATCTTTGTAAGTTTACTCTCAATATTAGGGACCCCTTCTGATTGTTTTAAACCAAAAAAACTTGTTAGTGTTGCTTCCAACTTCACATCTGATGCAAATTGGCAATCTACAATGGCTACCTGGTATGGAGCTCCAGAAGGATTTGGAAGTGACGGTGGTGCTTGTTTATTTGGAAAAGCTGTTGCTGGCCCTCCATACAACTCAATGATATCAGCTGGAAACCCTTCCATCTACCAATCAGGGAAAGGCTGCGGCACATGTTATCAGGTGAAGTGTACAGAAAATTCTGCTTGCTCAGGCAACCCTGTTACGGTATTTATCACCGACGAGTGTCCTGGTTGTCCTCATTTATTTGATTTGAGTGGGAAAGCTTTCGGTTTGATGGCAATTTCAGGTCAAGCAAACAACCTACGTAATGCTGGAAAAATATCTGTTCAATATCAAAGTGTTGCATGCCCAAAATAA 504 0.4067 MAFTLGQAFSHIFIFVSLLSILGTPSDCFKPKKLVSVASNFTSDANWQSTMATWYGAPEGFGSDGGACLFGKAVAGPPYNSMISAGNPSIYQSGKGCGTCYQVKCTENSACSGNPVTVFITDECPGCPHLFDLSGKAFGLMAISGQANNLRNAGKISVQYQSVACPK 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00922 167 PRINTS Major pollen allergen Lol pI signature 142 157 IPR005795 GO:0005576|GO:0019953
Vifa5g00922 167 PRINTS Major pollen allergen Lol pI signature 105 115 IPR005795 GO:0005576|GO:0019953
Vifa5g00922 167 PRINTS Major pollen allergen Lol pI signature 85 96 IPR005795 GO:0005576|GO:0019953
Vifa5g00922 167 Pfam Lytic transglycolase 84 160 IPR009009 -
Vifa5g00922 167 PANTHER EXPANSIN-B3 31 165 - -
Vifa5g00922 167 CDD DPBB_EXPB_N 47 165 - -
Vifa5g00922 167 PRINTS Expansin/Lol pI family signature 153 167 IPR007118 GO:0005576
Vifa5g00922 167 PRINTS Expansin/Lol pI family signature 46 61 IPR007118 GO:0005576
Vifa5g00922 167 PRINTS Expansin/Lol pI family signature 87 105 IPR007118 GO:0005576
Vifa5g00922 167 PRINTS Expansin/Lol pI family signature 64 82 IPR007118 GO:0005576
Vifa5g00922 167 Gene3D - 31 165 IPR036908 -
Vifa5g00922 167 SUPERFAMILY Barwin-like endoglucanases 35 166 IPR036908 -
Vifa5g00922 167 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 65 167 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00922 Vifa-Chr5 273102327 273103115 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00922 26 165 Expansin Gene Family AT1G65680 59.441 6.27e-57 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00922 - - psat:127127948 280.796