Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00921 ATGGCTACCTGGTATGGAGCTCCAGAAGGATTTGGAAGTGACGGTGGTGCTTGTTTATTTGGAAAAGCTGTTGCTGGCCCTCCATACAACTCAATGATATCAGCTGGAAACCCTTCCATCTACCAATCAGGGAAAGGCTGCGGCACATGTTATCAGGTGAAGTGTACAGAAAATTCTGCTTGCTCAGGCAACCCTGTTACGGTATTTATCACCGACGAGTGTCCTGGTTGTCCTCATTTATTTGATTTGAGTGGGAAAGCTTTCGGTTTGATGGCAATTTCAGGTCAAGCAAACAACCTACGTAATGCTGGAAAAATATCTGTTCAATATCAAAGTGTTGCATGCCCAAAATAA 354 0.4379 MATWYGAPEGFGSDGGACLFGKAVAGPPYNSMISAGNPSIYQSGKGCGTCYQVKCTENSACSGNPVTVFITDECPGCPHLFDLSGKAFGLMAISGQANNLRNAGKISVQYQSVACPK 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00921 117 PRINTS Expansin/Lol pI family signature 103 117 IPR007118 GO:0005576
Vifa5g00921 117 PRINTS Expansin/Lol pI family signature 37 55 IPR007118 GO:0005576
Vifa5g00921 117 PRINTS Expansin/Lol pI family signature 14 32 IPR007118 GO:0005576
Vifa5g00921 117 Pfam Lytic transglycolase 34 110 IPR009009 -
Vifa5g00921 117 SUPERFAMILY Barwin-like endoglucanases 2 116 IPR036908 -
Vifa5g00921 117 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 15 117 IPR007112 -
Vifa5g00921 117 PRINTS Major pollen allergen Lol pI signature 35 46 IPR005795 GO:0005576|GO:0019953
Vifa5g00921 117 PRINTS Major pollen allergen Lol pI signature 55 65 IPR005795 GO:0005576|GO:0019953
Vifa5g00921 117 PRINTS Major pollen allergen Lol pI signature 92 107 IPR005795 GO:0005576|GO:0019953
Vifa5g00921 117 PANTHER EXPANSIN-B3 2 115 - -
Vifa5g00921 117 Gene3D - 1 115 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00921 Vifa-Chr5 273028619 273029257 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00921 2 115 Expansin Gene Family AT1G65680 64.957 7.34e-51 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00921 - - psat:127127948 204.912