Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00916 ATGGCTTTTGCTTTAGGAACTCATATATTCATCTTTGTAAGTTTACTCTCAATATTAGGGACCCCTTCTGATTGTTTTAAACCAAAAAACCTTGTTAGTGTTGCTTCCAACTTCACATCTGATGCAGATTGGCCATCTACAATGGCAACTTGGTATGGAGCTCCAGAAGGCGATGGAAGTGAAAGTGGTGCTTGTGGATATGGAAGAGCTGTTGGTGGCCCTCCATACAACTCAATGATATCAGCTGGAAACCCTTCCATTTACCAATCAGGCAAAGGCTGCGGCACATGTTATCAGGTGAAGTGCACAGGAAATTCTGCTTGCTCGGGCAATCCTGTTAGGGTATTTATAACTGATTTGTGTCCTGAATGTGCTCATTATTTTGATTTGAGTGGCCATGCTTTCGGTTCCATGGCAAAGTCAGGTCAAGCTGACAACCTACGTACTGCTGGAAAAATATCAGTTCAATATGAAAGATGCTAG 483 0.4244 MAFALGTHIFIFVSLLSILGTPSDCFKPKNLVSVASNFTSDADWPSTMATWYGAPEGDGSESGACGYGRAVGGPPYNSMISAGNPSIYQSGKGCGTCYQVKCTGNSACSGNPVRVFITDLCPECAHYFDLSGHAFGSMAKSGQADNLRTAGKISVQYERC 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00916 160 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 62 160 IPR007112 -
Vifa5g00916 160 PRINTS Expansin/Lol pI family signature 61 79 IPR007118 GO:0005576
Vifa5g00916 160 PRINTS Expansin/Lol pI family signature 43 58 IPR007118 GO:0005576
Vifa5g00916 160 PRINTS Expansin/Lol pI family signature 84 102 IPR007118 GO:0005576
Vifa5g00916 160 PRINTS Expansin/Lol pI family signature 150 160 IPR007118 GO:0005576
Vifa5g00916 160 CDD DPBB_EXPB_N 44 159 - -
Vifa5g00916 160 Gene3D - 28 160 IPR036908 -
Vifa5g00916 160 PANTHER EXPANSIN-B3 30 159 - -
Vifa5g00916 160 PRINTS Major pollen allergen Lol pI signature 82 93 IPR005795 GO:0005576|GO:0019953
Vifa5g00916 160 PRINTS Major pollen allergen Lol pI signature 102 112 IPR005795 GO:0005576|GO:0019953
Vifa5g00916 160 PRINTS Major pollen allergen Lol pI signature 139 154 IPR005795 GO:0005576|GO:0019953
Vifa5g00916 160 Pfam Lytic transglycolase 81 157 IPR009009 -
Vifa5g00916 160 SUPERFAMILY Barwin-like endoglucanases 32 159 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00916 Vifa-Chr5 272584897 272585696 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00916 23 159 Expansin Gene Family AT1G65680 55.000 4.34e-50 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00916 - - psat:127127948 271.552