Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00913 ATGGCTAATAATTTAGAAAATACATTCTCCCATATACTCATCTTTGTAGGTTCACTCACAATATTTCTAGTGACTCCTTCGTCTTGTTTTAAACTAAAAAATATTGTTAGTATTACCTCTAACTTCTCATCTGATTCAAACTTGTTGTCTTCAGAGGCTACTTGGTATGGACCTCCCAATGGTTATGGAAGTGAAGGCGGTGCTTGTGGATATGGAAAAGCAGTTGGTAGGCGTCCATACAATTCAATGATATCAGCGGGAAATCCTTTCCTCTACCAATCAGGCAAAGGTTGCTGCTCATGTTTTCAGGTGAAATGCATAGGAAATTCTCTTTGCTCAGCAAACCCTATTAGGGTAGTTATCACCGATGAGTGTCCTGGTTGTGATCACTATTTTGATTTGAGTGGAAAAGCTTTTGGTTCCATGGCAATGTCAGGTCAAGATGACAAGCTACGCAATGTTGGAAAAATATCTGTTCAATATCAAAGAGTTGCATGCAACTACCCTGGTGTGTCAATAACTTTCCATGTTGACTCTGGATCTAACCAATACTATTTTGCTACTGCAATTGAATATGAAGATGGGGATGGTGATCTCAAAGCAGTCGAACTCAGAGAAAAAAACTCGATAACTTGGAAATCTATGCAAGTATCATTTGGTGCTGTTTGGAAAATTAATAATGGGGCACCATTAAGAGCACCATTTTCTATTAGGCTAACCACAATTGAGTCTGGAAAAATGTTTGTGGCCAATAATGTAATCCCTCTGGGTTGGAAGCCTGGTCAAACTTTCAGAGCAACTAAAAGTTTTAATTAA 816 0.3836 MANNLENTFSHILIFVGSLTIFLVTPSSCFKLKNIVSITSNFSSDSNLLSSEATWYGPPNGYGSEGGACGYGKAVGRRPYNSMISAGNPFLYQSGKGCCSCFQVKCIGNSLCSANPIRVVITDECPGCDHYFDLSGKAFGSMAMSGQDDKLRNVGKISVQYQRVACNYPGVSITFHVDSGSNQYYFATAIEYEDGDGDLKAVELREKNSITWKSMQVSFGAVWKINNGAPLRAPFSIRLTTIESGKMFVANNVIPLGWKPGQTFRATKSFN 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00913 271 PANTHER EXPANSIN-B3 37 266 - -
Vifa5g00913 271 Pfam Expansin C-terminal domain 173 255 IPR007117 -
Vifa5g00913 271 PRINTS Expansin/Lol pI family signature 47 62 IPR007118 GO:0005576
Vifa5g00913 271 PRINTS Expansin/Lol pI family signature 154 170 IPR007118 GO:0005576
Vifa5g00913 271 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Vifa5g00913 271 PRINTS Expansin/Lol pI family signature 212 226 IPR007118 GO:0005576
Vifa5g00913 271 PRINTS Expansin/Lol pI family signature 252 266 IPR007118 GO:0005576
Vifa5g00913 271 PRINTS Expansin/Lol pI family signature 88 106 IPR007118 GO:0005576
Vifa5g00913 271 Pfam Lytic transglycolase 85 161 IPR009009 -
Vifa5g00913 271 SUPERFAMILY PHL pollen allergen 172 265 IPR036749 -
Vifa5g00913 271 SUPERFAMILY Barwin-like endoglucanases 38 170 IPR036908 -
Vifa5g00913 271 Gene3D - 170 270 IPR036749 -
Vifa5g00913 271 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 184 266 IPR007117 -
Vifa5g00913 271 PRINTS Major pollen allergen Lol pI signature 86 97 IPR005795 GO:0005576|GO:0019953
Vifa5g00913 271 PRINTS Major pollen allergen Lol pI signature 191 206 IPR005795 GO:0005576|GO:0019953
Vifa5g00913 271 PRINTS Major pollen allergen Lol pI signature 221 238 IPR005795 GO:0005576|GO:0019953
Vifa5g00913 271 PRINTS Major pollen allergen Lol pI signature 121 136 IPR005795 GO:0005576|GO:0019953
Vifa5g00913 271 PRINTS Major pollen allergen Lol pI signature 143 158 IPR005795 GO:0005576|GO:0019953
Vifa5g00913 271 PRINTS Major pollen allergen Lol pI signature 175 190 IPR005795 GO:0005576|GO:0019953
Vifa5g00913 271 CDD DPBB_EXPB_N 53 166 - -
Vifa5g00913 271 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 66 171 IPR007112 -
Vifa5g00913 271 Gene3D - 32 167 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00913 Vifa-Chr5 272114521 272117401 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00913 27 270 Expansin Gene Family AT1G65680 52.016 8.64e-93 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00913 - - gmx:548090 350.517