Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00907 ATGGATAACACCAGCTCTGATAAGCAGTGCACCAGAACCACAACCGTAGATGACCATGATTCTGTTTGCCACAGTAGACCAACTAGGAATGATGCTGACGAAGATGATAAAAAGAGAGAAAATCGAAAATCATCGGTATCCACCAAAAGAAGTAGAGCTGCAGCTATACACAACCAATCCGAAAGGAAAAGGAGGGATAAGATAAACCAAAGAATGAAGACATTGCAAAAGTTGGTCCCAAATTCCAGCAAGACAGATAAGGCTTCGATGTTGGATGAGGTGATAGAATATCTGAAACAATTGCAAGCACAAGTGAACATGGTGAATAGATTCAACATGACATCTATGATGATGCCCATGACCATGCAGCAACAACTTCAAATGTCGATGATGAATCCAATGGGCATGGGAATGGGGCCGATGGGCATGGCTGGGATGGGAATGGGCATGGGAATGGGCATGGGAATGGATATGAACCCTATAAATCGAGCTAATATTCCCGGAATGCCTCCAGTCCTCCACCCTTCAGCATTCATGCCTATGCCTGCATGGGATGCCGCTGCGGCCGCCACCGCCACCGACCGACTTCAAGGGCCTCCCGCAACCGGGATGGCTGACCCTATGTCAACATTTTTTGGATGCCAATCACAGCCTATGACAATGGAGGCATATAGTAGGATTGCTGCCATGTATCAGCAGATGCAGCAACAACCTCCGGCACCAGGTTCAAAAACTTGA 738 0.4715 MDNTSSDKQCTRTTTVDDHDSVCHSRPTRNDADEDDKKRENRKSSVSTKRSRAAAIHNQSERKRRDKINQRMKTLQKLVPNSSKTDKASMLDEVIEYLKQLQAQVNMVNRFNMTSMMMPMTMQQQLQMSMMNPMGMGMGPMGMAGMGMGMGMGMGMDMNPINRANIPGMPPVLHPSAFMPMPAWDAAAAATATDRLQGPPATGMADPMSTFFGCQSQPMTMEAYSRIAAMYQQMQQQPPAPGSKT 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00907 245 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 50 115 IPR036638 GO:0046983
Vifa5g00907 245 CDD bHLH_AtPIF_like 52 107 IPR047265 -
Vifa5g00907 245 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 52 101 IPR011598 GO:0046983
Vifa5g00907 245 FunFam transcription factor UNE10 isoform X1 47 112 - -
Vifa5g00907 245 Pfam Helix-loop-helix DNA-binding domain 57 102 IPR011598 GO:0046983
Vifa5g00907 245 SMART finulus 58 107 IPR011598 GO:0046983
Vifa5g00907 245 MobiDBLite consensus disorder prediction 12 47 - -
Vifa5g00907 245 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 6 241 IPR031066 -
Vifa5g00907 245 Gene3D - 47 112 IPR036638 GO:0046983
Vifa5g00907 245 MobiDBLite consensus disorder prediction 1 67 - -
Vifa5g00907 245 Coils Coil 58 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00907 Vifa-Chr5 271039693 271043081 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00907 15 225 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 53.917 4.14e-55 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa5g00907 HLH 2.8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00907 - - gmx:100798775 290.041