Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00899 ATGGAAGGAGTTTCAAGTAGAACTCGTAGCAAGAACATTCCTCGCTCGCTTCATGGATCATCAAAGCGGATAAAGAAAGAGGAAGCTGATATGTCTTTTGCTGCTTCTTGTTCTAAAAAAAGAAAGCCATTTGTGTTGCCTCCAGATGCTCAAGTTATTTTGATTGATGATGATGTTAAAGAAGAAGTAGAAAGTGAAGAAAATGGTGGGTTTGTTGATGAAAAGCCGACTGTTATATGTTTAGATGAATCCGGTGAAAGTGATGAACAAGATTCAGATTCTGATGAACGTGAGGAAAATGATTCAAGTGATGAAGATTTTGACATAAATGAAGTGAATGAAGTTTCTGAGAGTGATGAAGATGGTTCATCATCTTGCTCTTCTTACGTGGATGAAGCAAATGCAAAGAGAGACGGTTCACAGAAATACCTGGATGTGGTGGGGGAGATGGTGAGAAAGGTAATGGATGATGAAACAAGTGGTATTTCCGAGAAGAAAACGATTAAGAATAGTGATGATGAGAAAAGTGAAACTTCAAAGAGGAAGAAAAAGGTTAAGAGTAGTGATCGTGAAAAAAGTGAAACTTCAAAGAGGAAGAAGAAGATTAAGAGTAGTGATGATGAAAAAAGTGAGATTTCAGAGAAGAAAAAGGTTAAGAGAAGTGATGATGAATCGGAGCATGAAGATGATGGTAGTGTAACAAAAACTACTAAGAAGGGTTTTATTCATCCAATGGAGGGTTGTTCATCTTCCTCTAATCTGAATGTAGCATCACAGACAAAAAAGGAAAAAAATGTCTCTGATGAAGGTATAGGTGATGGTGAAGCAAGTGGTTGTACGATTCAAACAGAAGAGAAAGTGATCAAGAACAAAGGAAGAGATTATAAAGGTAAAGCCACCATCCAAAATGAGAGGAAAAAGGCAACAGTTGCTGCTAACAAAGGTTTGAATCAGAAGGGCAGAAACACATTTTTTACGCGCAAGGAGTTGCGTTTATTCGAACTCCTTGCTGAATTCTACTGGGGAAACAAGGATAATACAGTTAAGAATGATTCAACTCCGTTAGAGGTGAAGAATGATGAAACACGGCTACGGCCGGCTTCTGTGGAGACGCGTCCATTGATATGGAGCCTTAAAAAGAAGGAAGTAGTGCAGAAGAGTAAGGAGGAGGAGGAGGCGGCTCAGTTATGGGATGAACTGGAGAGATCACTGAGAGAAATGGAAGCCGAATCAATGATTGGAAAATATGAAACTAGTCATGAAAATTTGGGAAATCCATCCACTAGCTGTGAGCATGACCTTCGTCTCGACGAGGAGATCGGTGTATACTGCAGATTATGCCGCTGGGTCGAAACTGAGATTCGATATGTCTCCGAACAAGTAGTGGATAAATTTCCCAATGAAGGTTCTAGAAAAAGAGCTTCATTTGATGATGTAAATGTGTCACATTTTGATGGATCACAGTTCAATTTTTTTGATAATTATTCAGATCAGTCAAATTTCTTTGATGATCAAGGCACTGTTTGGGAGCTGATACCTGATGTGAAGCAGAGCTTGTATCCTCACCAACAAGAAGGCTTTGAATTCATGTGGAAAAACTTGGCAGGAAGCATTGATCTTCACAAGTTAAAGAGCGCAGATACTCAAAGCGAGGGTGGCTGCATTATCTCGCACGCTCCTGGAACTGGAAAGACTAGGCTGACTATAGTCTTTCTCGGGACTTATCTGAAAGTTTTCCCGAAATGCTTGCCTGTTATAGTTGCTCCAGCGAGTTTGTTGCTTACTTGGGAAGAGGAGTTCAAGAAATGGGACATTGGAGTTCCATTTCATAATTTGGGCAATCTTGAGTTATCCGGTAAAGAGCATGCTGATGCCCTTAATTTGCTTGGTCGGTCTAATAGCGCGGATACAACCCGGATGGCGAAACTGATTTCATGGAACAAAGAAAGGAGCATTCTAGGAATCAGTTACAATTTGTATGAGAAGCTAGCCGGAGGAGGAGGAGGATCTCACGACAAGAAAAATGAAAAACAAGAAATTATGGGAAATGTTTTGCGTGAGAAACCGGGTTTACTCGTGCTAGATGAAGGACACACTCCGAGAAATCAGACAAGTGGTATTTGGAAGGTGTTGTCCAAGAGTCAATCAAAGAAGCGAATCATACTTTCGGGAACTCCTTTCCAGAACAATTTCTTGGAGCTGTATAACACTTTGAGCTTAGTGAAGCCTTCTTTTCCTAACACATTACCGGATGAGCTGAAAAAGTTTTGCCAGAAGCCGGAACAGAAGAAACCGACGAAAGAATGGATTTGGCAACCAGACTCAGCTTCTGATGATAAGATCAAGCAGTTGAAATTGCTTATGGATCCCTTAGTTCATGTTCACAAAGGTGCAATCCTTCAAAAGAAGCTTCCCGGGATAAGGAATCGTGTGCTGAGATTGAAACCGGATAGCTTACATAAGCAAACGATTGAGAGCATTCAAAGTTCTCAGAGTAATTTCACCTTTGAGCATAAGCTGACAATGGCATCCATTCATCCGTCGCTTTTGCTCGAATGCGTTCTTTTGGAAAAAGAGGAATCCGTTCTGGACAAGGAGCAGCTAGAAAAGGTTAGATTGGACCCCAACAGAGGTGTCAAGACAAAGTTTCTGGTGGAGTTTGTTAGACTCTGTGATGCTGCAAATGAGAAAGTTCTCGTGTTCAGTCAATTCATCAAACCATTACGCTTAATTATAGACCAATTAAGCTTGGCTTGTAAATGGACAGAAGGGAAGGAAATGCTGTTCATGGATGGAGAGGTTGATCTTCAGGGCAGGCAATCCATTATCGACAACTTCAATGGGACCAATTGTCAAGCTAAGATTCTACTTGCATCCGTGAAAGCAAATTCCGAGGGAATCAGCTTAGTTGGAGCGTCGAGAGTTGTACTGCTGGATGTTGTATGGAATCCGTCTGTGAAAAAGCAGGCTATCAGCAGAGCGTATCGGATTGGACAGAAGCGGGTTGTATACACTTACCATCTGCTCATTGAAGGTACTACCGAGTGCGTGAAACATTGTAAGCAGGCGGAAAAGGATCGATTATCTGAACTTGTTTTCCAAGGTAAGAATAATGATAATGATGAGTTGGAGAAGTGTGCTGTGAAGTTTGAAGACAGTGTTCTTGATAAAATGATACATCACAAAGAGCTCAAAGACATGTTTGTTGAGGGAGAAAGTTCAGCCAAAGGAGCGAGATTTCGGGATCTATAA 3252 0.4102 MEGVSSRTRSKNIPRSLHGSSKRIKKEEADMSFAASCSKKRKPFVLPPDAQVILIDDDVKEEVESEENGGFVDEKPTVICLDESGESDEQDSDSDEREENDSSDEDFDINEVNEVSESDEDGSSSCSSYVDEANAKRDGSQKYLDVVGEMVRKVMDDETSGISEKKTIKNSDDEKSETSKRKKKVKSSDREKSETSKRKKKIKSSDDEKSEISEKKKVKRSDDESEHEDDGSVTKTTKKGFIHPMEGCSSSSNLNVASQTKKEKNVSDEGIGDGEASGCTIQTEEKVIKNKGRDYKGKATIQNERKKATVAANKGLNQKGRNTFFTRKELRLFELLAEFYWGNKDNTVKNDSTPLEVKNDETRLRPASVETRPLIWSLKKKEVVQKSKEEEEAAQLWDELERSLREMEAESMIGKYETSHENLGNPSTSCEHDLRLDEEIGVYCRLCRWVETEIRYVSEQVVDKFPNEGSRKRASFDDVNVSHFDGSQFNFFDNYSDQSNFFDDQGTVWELIPDVKQSLYPHQQEGFEFMWKNLAGSIDLHKLKSADTQSEGGCIISHAPGTGKTRLTIVFLGTYLKVFPKCLPVIVAPASLLLTWEEEFKKWDIGVPFHNLGNLELSGKEHADALNLLGRSNSADTTRMAKLISWNKERSILGISYNLYEKLAGGGGGSHDKKNEKQEIMGNVLREKPGLLVLDEGHTPRNQTSGIWKVLSKSQSKKRIILSGTPFQNNFLELYNTLSLVKPSFPNTLPDELKKFCQKPEQKKPTKEWIWQPDSASDDKIKQLKLLMDPLVHVHKGAILQKKLPGIRNRVLRLKPDSLHKQTIESIQSSQSNFTFEHKLTMASIHPSLLLECVLLEKEESVLDKEQLEKVRLDPNRGVKTKFLVEFVRLCDAANEKVLVFSQFIKPLRLIIDQLSLACKWTEGKEMLFMDGEVDLQGRQSIIDNFNGTNCQAKILLASVKANSEGISLVGASRVVLLDVVWNPSVKKQAISRAYRIGQKRVVYTYHLLIEGTTECVKHCKQAEKDRLSELVFQGKNNDNDELEKCAVKFEDSVLDKMIHHKELKDMFVEGESSAKGARFRDL 1083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00899 1083 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 883 1039 IPR001650 -
Vifa5g00899 1083 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 39 1070 IPR044567 GO:0080188
Vifa5g00899 1083 MobiDBLite consensus disorder prediction 1 17 - -
Vifa5g00899 1083 Gene3D - 805 1078 IPR027417 -
Vifa5g00899 1083 MobiDBLite consensus disorder prediction 1 29 - -
Vifa5g00899 1083 CDD SF2_C_SNF 855 1009 - -
Vifa5g00899 1083 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 688 1042 IPR027417 -
Vifa5g00899 1083 Coils Coil 390 410 - -
Vifa5g00899 1083 MobiDBLite consensus disorder prediction 60 277 - -
Vifa5g00899 1083 MobiDBLite consensus disorder prediction 135 236 - -
Vifa5g00899 1083 Pfam SNF2-related domain 522 840 IPR000330 GO:0005524|GO:0140658
Vifa5g00899 1083 MobiDBLite consensus disorder prediction 246 261 - -
Vifa5g00899 1083 MobiDBLite consensus disorder prediction 84 118 - -
Vifa5g00899 1083 Gene3D - 496 793 IPR038718 -
Vifa5g00899 1083 SMART helicmild6 913 998 IPR001650 -
Vifa5g00899 1083 SMART ultradead3 515 756 IPR014001 -
Vifa5g00899 1083 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 545 744 IPR014001 -
Vifa5g00899 1083 Pfam Helicase conserved C-terminal domain 891 998 IPR001650 -
Vifa5g00899 1083 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 507 790 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00899 Vifa-Chr5 267793004 267796690 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00899 893 1028 RAD5 or RAD16-like Gene Family AT5G43530 38.971 1.55e-18 89.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vifa5g00899 SNF2_N 9.8e-22 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00899 K10875 - gmx:100806733 822.772