Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00896 ATGGACTTTGGAGGGAACATGTTCTGTCTCAACAACAGAGACCAAAATAATAACACTAACGGTAACAGTAACAGCAACGGTTTCACTTGGGGTAGTAGTAGTAGTACTCCTACTACTAGTAACACTGCATGGAACAACAATACTTTCAACGTTGCCGTCAACCCTGGTTTAGACAACACGGTGATGTTTCATCCACATGCAAATGCAAACGAAGGTGGTCTACGGCAGCTTCGGGGGAGCTACACGGAGGCGTTCGGCGGAGGTTTGGCTAGGGCTCACATGCCGGATCCGCATCTCACGTGTTTGAAGCTGGGGAAGAGGCATTATTTCGAGGATGTGAGTGGTGGTATGGTGGATAAGAGAGGGAAGGGGTACTGCGGCGGTGGCGGGAAGGCGGTGGCGGGTTTGGCGGTGGGGAGTTCGGTGGCGAGATGTCAGGTGGATGGGTGCCACGTGGGATTGATGAACGCGAAGGAGTATCATAGGAGACATAAGGTTTGTGAGATGCATTCAAAGGCACCAAAAGTTGTGGTCATGGGTTTGGAGCAGAGATTCTGTCAGCAGTGTAGCAGGTTCCATGTTGTGTCGGAGTTTGATGATTCAAAGAGAAGTTGTAGGAGAAGACTGGCAGGGCACAATGAGAGAAGAAGAAAGAGCTCCCATGATTCTGTTGCAAGGAGTTCATCACAAGGTGGGTGTGCTCTCTCTCTTCTGTCATCTAGGACTGATTCATGGCTTTCTCCTGATGATCTCTCCGTAAGATGCAGTGCTGCATTAAGCGAATTGATAGCAGAAAACCGAGCGGCTATAATGGCTAGACAATATGTCGTCTCAGATAGAGACTGGCATTTGCAACACCATGCAGTAGAAGACTACAAAGAGATTCAACCTGAATCCAACTATTTCCCACAACAGATGTTTCCGCAGACACACTAA 936 0.4861 MDFGGNMFCLNNRDQNNNTNGNSNSNGFTWGSSSSTPTTSNTAWNNNTFNVAVNPGLDNTVMFHPHANANEGGLRQLRGSYTEAFGGGLARAHMPDPHLTCLKLGKRHYFEDVSGGMVDKRGKGYCGGGGKAVAGLAVGSSVARCQVDGCHVGLMNAKEYHRRHKVCEMHSKAPKVVVMGLEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSSHDSVARSSSQGGCALSLLSSRTDSWLSPDDLSVRCSAALSELIAENRAAIMARQYVVSDRDWHLQHHAVEDYKEIQPESNYFPQQMFPQTH 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00896 311 MobiDBLite consensus disorder prediction 14 42 - -
Vifa5g00896 311 SUPERFAMILY SBT domain 143 224 IPR036893 GO:0003677|GO:0005634
Vifa5g00896 311 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 32 239 IPR044817 GO:0003677
Vifa5g00896 311 Pfam SBP domain 145 218 IPR004333 GO:0003677
Vifa5g00896 311 Gene3D - 137 206 IPR036893 GO:0003677|GO:0005634
Vifa5g00896 311 FunFam Squamosa promoter-binding-like protein 14 137 206 - -
Vifa5g00896 311 ProSiteProfiles Zinc finger SBP-type profile. 142 219 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00896 Vifa-Chr5 267072902 267074719 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00896 101 218 SBP-box Gene Family AT1G27370 50.746 1.37e-37 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vifa5g00896 SBP 2.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00896 - - tpra:123889927 410.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g00896 5 267072902 267074719 Vifa5g00896 5 267072902 267074719 ECH