Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00894 ATGGTTCGCTTCTCCAGGTCCTCCGCACACCGTCTCCTCTACGCACTATGCTCCTCCACCACCACAGTCTCTCCATCCCCAACCGGCTCCCTCATCGGTGGCACTTTCCACCTCCGACACTTCTCAGCCGGGAACGTGGCACGTGCCAAGGCGGCGTCAGTTAACAAGGAGCCTTGGTGGGTGGAGTCTATGGAAATGATTCGCAACATCGGTATCTCGGCGCACATCGATTCCGGGAAGACGACTTTGACGGAGCGGGTGCTGTTTTACACCGGTCGGATCCACGAGATCCATGAGGTGAGAGGGAAGGATGGCGTTGGTGCCAAGATGGATTCCATGGCGTTGGAGAGAGAGAAGGGAATCACTATTCAGTCTGCTGCTACTCATTGTACATGGAAGGACTATAAGATCAACATAATTGACACACCTGGTCATGTTGATTTCACCATTGAGGTTGAGAGGGCTTTGCGTGTCCTTGATGGTGCCATTCTTGTGTTTTGTAGCGTTGGTGGGGTGCAAAGTCAGTCCATTACCGTTGATCGGCAAATGAGAAGATATGAGGTTCCTAGACTTGCATTTATTAACAAGCTTGATCGAATGGGAGCAGATCCATGGAAAGTAATAAATCAGGCTAGATCTAAGCTTCGGCATCATAATGCTGCAGTTCAAGTTCCAATAGGTTTGGAAGATGATTTCAAGGGACTTGTTGATCTTGTGAAGCTAAAGGCCTATTATTTTCATGGTTCAAATGGCGAAAAAATTGTCATTGAAGAGGTGCCTTCAGATATGGAAACCTTGGTGTCTGAAAAAAGACGTGAACTAATAGAAACCGTGTCAGAGGTTGATGATATACTTGCTGAAGCGTTTCTGAGTGATGAACCCATTTCAGATGCTGATCTTGAGGGAGCAATTCGTAGGGCTACCATAGCACAGAAATTTATACCGGTATTCATGGGTAGTGCTTTCAAAAACAAGGGAGTACAGTCACTTCTGGATGGAGTACTTGGTTATTTGCCATGTCCAATTGAAGTTAGTAATAATGCTCTTGACCAATCTAAGAACGAGGAGAAGATTGAGCTGACTGGAAGTCCTGATGGGCCCCTTGTAGCATTGGCTTTCAAATTGGAGGAAAATAAGTTTGGTCAGTTATCATATCTAAGAATTTATGAGGGCGTCATTCGGAAGGGGGATTTTGTGATTAATGTTAACTCTGGCAAGAAGACCAAGATTTCTCGCTTGGGTCGGATGCATTCTAATGAATTGCAGGAGATTCAGGAGGCCCATGCTGGCGAAATAATTGCTGTATTCGGTGTTGATTGTGCATCAGGAGATACTTTTACTGATGGGTCCGTTAAATACACAATGACTTCTATGAATGTTCCTGAGCCCGTGATGTCTTTAGCTGTACAGCCTGTCTCAAAAGATTCTGGAGGGCAATTTTCAAAAGCTTTGAACCGCTTCCAAAGAGAGGATCCTACTTTCCGTGTTGGCTTGGACCCAGAAAGTGGGCAGACAATCATTTCTGGAATGGGAGAACTGCACTTAGATATCTATGTTGAACGCATTAAGAGGGAGTACAAGGTTGATGCTACAGTTGGAAAGCCCCGTGTGAACTTCAGAGAAACTGTTACTCAACGTGCTGAATTTGATTATTTACATAAGAAGCAATCCGGAGGGCAAGGACAATATGGACGGGTGATTGGGTATATTGAACCACTTCCTGCCGAGTCTGGAACTAAGTTTGAATTTGAAAACATGCTTGTTGGCCAAGCTGTTCCATCAAATTTTATCCCTGCAATTGAGAAAGGTTTTAGAGAAGCAGCCAACTCTGGTGCCTTAATTGGACATCCAGTTGAAAATCTCCGAGTTGTCTTGACAGATGGTGCTGCTCATGCTGTTGATTCCAGCGAACTTGCCTTTAAGATGGCTTCTATCTACGCTTTTAGACAGTGTTACACAGCTTCCAGACCAGTTATATTAGAACCTGTAATGCTTGTTGAGCTGAAAGTACCAACAGAATTTCAAGGAGCTGTTGCTGGTGACCTCAACAAGAGAAAAGGTCTGATTGTTGGCAATGATCAGGATGGGGATGATTCTGTCCTTACAGCTCATGTCCCTCTTAACAATATGTTTGGGTATTCTACAGCTCTTCGTTCCATGACACAGGGAAAGGGTGAATTCACAATGGAATATAAGCAACATGCACCGGTTTCTCATGATGTACAAATCCAACTCATAAACGCATACAAGGGCACTCAGGCGGCTGAATGA 2271 0.4483 MVRFSRSSAHRLLYALCSSTTTVSPSPTGSLIGGTFHLRHFSAGNVARAKAASVNKEPWWVESMEMIRNIGISAHIDSGKTTLTERVLFYTGRIHEIHEVRGKDGVGAKMDSMALEREKGITIQSAATHCTWKDYKINIIDTPGHVDFTIEVERALRVLDGAILVFCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVINQARSKLRHHNAAVQVPIGLEDDFKGLVDLVKLKAYYFHGSNGEKIVIEEVPSDMETLVSEKRRELIETVSEVDDILAEAFLSDEPISDADLEGAIRRATIAQKFIPVFMGSAFKNKGVQSLLDGVLGYLPCPIEVSNNALDQSKNEEKIELTGSPDGPLVALAFKLEENKFGQLSYLRIYEGVIRKGDFVINVNSGKKTKISRLGRMHSNELQEIQEAHAGEIIAVFGVDCASGDTFTDGSVKYTMTSMNVPEPVMSLAVQPVSKDSGGQFSKALNRFQREDPTFRVGLDPESGQTIISGMGELHLDIYVERIKREYKVDATVGKPRVNFRETVTQRAEFDYLHKKQSGGQGQYGRVIGYIEPLPAESGTKFEFENMLVGQAVPSNFIPAIEKGFREAANSGALIGHPVENLRVVLTDGAAHAVDSSELAFKMASIYAFRQCYTASRPVILEPVMLVELKVPTEFQGAVAGDLNKRKGLIVGNDQDGDDSVLTAHVPLNNMFGYSTALRSMTQGKGEFTMEYKQHAPVSHDVQIQLINAYKGTQAAE 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00894 756 PRINTS GTP-binding elongation factor signature 118 126 IPR000795 GO:0003924|GO:0005525
Vifa5g00894 756 PRINTS GTP-binding elongation factor signature 154 165 IPR000795 GO:0003924|GO:0005525
Vifa5g00894 756 PRINTS GTP-binding elongation factor signature 138 148 IPR000795 GO:0003924|GO:0005525
Vifa5g00894 756 PRINTS GTP-binding elongation factor signature 69 82 IPR000795 GO:0003924|GO:0005525
Vifa5g00894 756 PRINTS GTP-binding elongation factor signature 190 199 IPR000795 GO:0003924|GO:0005525
Vifa5g00894 756 SUPERFAMILY EF-G C-terminal domain-like 658 749 IPR035647 -
Vifa5g00894 756 Gene3D - 61 344 IPR027417 -
Vifa5g00894 756 NCBIfam elongation factor G 64 749 IPR004540 GO:0003746|GO:0005525|GO:0006414
Vifa5g00894 756 CDD mtEFG1_II_like 368 448 - -
Vifa5g00894 756 CDD EFG_mtEFG1_IV 539 652 IPR005517 GO:0005525
Vifa5g00894 756 Pfam Elongation factor G C-terminus 659 742 IPR000640 -
Vifa5g00894 756 Gene3D - 541 745 IPR014721 -
Vifa5g00894 756 PANTHER ELONGATION FACTOR G, MITOCHONDRIAL 14 748 - -
Vifa5g00894 756 SUPERFAMILY EF-G C-terminal domain-like 458 535 IPR035647 -
Vifa5g00894 756 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 65 342 IPR000795 GO:0003924|GO:0005525
Vifa5g00894 756 Gene3D Elongation Factor G (Translational Gtpase), domain 3 467 540 - -
Vifa5g00894 756 SUPERFAMILY Translation proteins 306 458 IPR009000 -
Vifa5g00894 756 FunFam Elongation factor G 464 540 - -
Vifa5g00894 756 Pfam Elongation Factor G, domain III 460 534 IPR041095 -
Vifa5g00894 756 SMART EFG_IV_2 536 656 IPR005517 GO:0005525
Vifa5g00894 756 CDD mtEFG1_C 661 738 IPR035649 -
Vifa5g00894 756 SUPERFAMILY Ribosomal protein S5 domain 2-like 535 657 IPR020568 -
Vifa5g00894 756 SMART EFG_C_a 658 745 IPR000640 -
Vifa5g00894 756 Gene3D - 662 732 - -
Vifa5g00894 756 Pfam Elongation factor G, domain IV 535 654 IPR005517 GO:0005525
Vifa5g00894 756 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 64 339 IPR027417 -
Vifa5g00894 756 Pfam Elongation factor Tu GTP binding domain 67 339 IPR000795 GO:0003924|GO:0005525
Vifa5g00894 756 FunFam Elongation factor G 662 732 - -
Vifa5g00894 756 CDD EF-G 69 341 - -
Vifa5g00894 756 FunFam Elongation factor G, mitochondrial 350 463 - -
Vifa5g00894 756 Hamap Elongation factor G [fusA]. 63 749 IPR004540 GO:0003746|GO:0005525|GO:0006414
Vifa5g00894 756 Gene3D Translation factors 348 466 - -
Vifa5g00894 756 Pfam Elongation factor Tu domain 2 381 447 IPR004161 GO:0005525
Vifa5g00894 756 CDD EFG_III 461 536 IPR009022 -
Vifa5g00894 756 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 111 126 IPR031157 -
Vifa5g00894 756 FunFam Elongation factor G 541 675 - -
Vifa5g00894 756 FunFam Elongation factor G, mitochondrial 58 345 - -
Vifa5g00894 756 NCBIfam small GTP-binding protein domain 68 240 IPR005225 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00894 Vifa-Chr5 265356488 265370140 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00894 383 543 Eukaryotic Initiation Factors Gene Family AT3G22980 26.404 3.91e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00894 K02355 - gmx:100783315 1331.62