Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa5g00893 | ATGGTTCGCTTCTCCAGGTCCTCCGCGCACCGTCTTCTCCACGCACTATGCTCCTCCACCACCACAGTCTCTCCATCCCCAACCGGCTCCCTCATCGCCGCCACTTTCCACCTCCGACACTTCTCAGCCGGAAACGTCGCCCGTGCCAAGGCAGCATCAATTAACAAGGAGCCTTGGTGGATGGAGTCAATGGAAATGATTCGCAACATTGGTATCTCGGCACACATCGATTCCGGGAAGACGACTTTGACGGAGCGGATACTGTTCTACACTGGCCGGATTCACGAGATCCATGAGGTGAGAGGGAAGGATGGCGTTGGTGCCAAGATGGATTCCATGGTGTTGGAGAAACGGAAGGGAATCACTATTCAGTCTGCTGCTACAAATTGTACTTGGAAGGACTATAAGATCAACATAATTGACACACCTGGTCATGTTGATTTCACCATTGAGGTTGAAAGGGCTTTGCGTGTCCTTGATGGTGCCATTCTTGTGTTTTGTAGTGTTGGTGGGGTGCAAAGTCAGTCCATTACCGTTGATCGGCAAATGAGAAGATATGAGGTTCCAAGACTTGCATTTATTAACAAGCTTGATCGAATGGGAGCAGATCCATGGAAAGTAATAAATCAGGCTAGATCTAAGCTTCGGCATCATAATGCTGCAGTTCAAGTTCCCATAGGTTTGGAAAATGGTTTTAAGGGACTTGTTGATCTTGTGAAGCTAAAGGCCTATTATTTTCATGGTTCAAAAGGCGAAAAAGTTGTCATTGAAGAGGTGCCTTCGGATATGGAAGCGTTGGTGGCTGAAAAAAGACGCGAACTAATAGAAACCGTGTCAGACGTTGATGATATACTTGCTGAAGCGTTTCTTAGTGATAAAGCCATTTCAGATGCTGATCTTGAGGAATATCCTTGGTTTGTTTGTTTGATATTGAGTGATCATTATGGTCCTCCCTACGTTTCAAATCATGAGTCTACACCAGCAGCGCAAAAGAAAGTCGGTTGGTGTAGTCTGAAAGTTTCAGCCAGTGGCAGTGCAGCCGTTTGCATGCCCCTGGCCGGGGATAGAGCACCAAAGTCACCGGGAGCAATTCGTAGGGCTACCATAGCACAAAAATTTATACCGGTATTCATGGGTAGTGCTTTCAAAAACAAGGGAGTACAGTCACTTCTGGACGGAGTACTTAGTTATTTGCCATGTCCAACTGAAGTTAGTAATAATGCTCTTGACCAATCTAAGAACGAGGAGAAGATTGAGCTGACTGGAAGTCCTGATGGTCCCCTTGTAGCATTGGCTTTCAAATTGGAGGAAAATAAGTTTGGGCAGTTATCATATCTAAGAATTTATGAGGGCGTCCTTCGGAAGGGGGATTTTGTGACTAATGTTAACTCTGGCAAGAAGACCAAGATTTCTCGCTTGGGTCGGATGCATTCTAATGAAATACAGGACATTCAGGAGGCCCATGCTGGCAAAATAATTGCTGTATATGGTGTTGATTGTGCATCAGGAGATACTTTTACTGATGGGTCGGTTAAATACACAATGACTTCTATGAATGTTCCTGAGCCCGTGATGTCTTTAGCTGTACAGCCTGTCTCAAAAGAAGCTGGAGGGCAATTTTCAAAAGTTTTGAACCGCTTCCAAAGAGAGGATCCTACTTTCCGTGTTGGCTTGGACCCAGAGAGTGGGCAGACAATCATTTCTGGAATGGGAGAACTGCACTTAGAAATCTATGTTGAACGCATTAAGACGGAGTACAAGGTTGATGTTACAGTTGGAAAGCCCCGTGTGAACTTCAGAGAAACTGTTACTCAACGTGCTGATTTTGATTATTTACATAAGAAGCAATCCGGAGGGCAAGGACAATATGGACGGGTGATTGGGTATATCGAACCACTTCCTGCCGAGTCGGGAACTAAGTTTGAGTTTCAAAACATGCTGGTTGGCCAAGCTGTTCCATCAAGTTTTATCCCTGCAATTGAGAAAGGTTTTAGAGAAGCTGCCAACTCTGGTGCCTTAATTGGACATCCAGTTGAAAATCTCCGAGTTGTCTTGACAGATGGTGCTGCTCATGCTGTTGATTCCAGCGAACTTGCCTTTAAGATGGCTTCTATCTACGCTTTTAGACATTGTTACGCAGCTTCCAGACCAGTTATATTAGAACCTGTTATGCTTGTTGAGCTGAAATTACCAACAGAATTTCAAGGAGCTGTTGCTGGTGACCTCAACAAGAGAAAAGGTCTGATTGTTGGCAATGATCAGGATGGGGATGATTGTGTCCTTACAGCTCATGTCCCTCTTAACAATATGTTTGGGTATTCTACAGCTCTTCGTTCGATGACACAGGGAAAGGGTGAATTCACAATGGAATATAAGCAACATTCACCGGTTTCCAATGATGTACAGACCCAATTGATAAACGCATACAAGGGGACTCAGGCGGCTGAATGA | 2451 | 0.4492 | MVRFSRSSAHRLLHALCSSTTTVSPSPTGSLIAATFHLRHFSAGNVARAKAASINKEPWWMESMEMIRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGKDGVGAKMDSMVLEKRKGITIQSAATNCTWKDYKINIIDTPGHVDFTIEVERALRVLDGAILVFCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVINQARSKLRHHNAAVQVPIGLENGFKGLVDLVKLKAYYFHGSKGEKVVIEEVPSDMEALVAEKRRELIETVSDVDDILAEAFLSDKAISDADLEEYPWFVCLILSDHYGPPYVSNHESTPAAQKKVGWCSLKVSASGSAAVCMPLAGDRAPKSPGAIRRATIAQKFIPVFMGSAFKNKGVQSLLDGVLSYLPCPTEVSNNALDQSKNEEKIELTGSPDGPLVALAFKLEENKFGQLSYLRIYEGVLRKGDFVTNVNSGKKTKISRLGRMHSNEIQDIQEAHAGKIIAVYGVDCASGDTFTDGSVKYTMTSMNVPEPVMSLAVQPVSKEAGGQFSKVLNRFQREDPTFRVGLDPESGQTIISGMGELHLEIYVERIKTEYKVDVTVGKPRVNFRETVTQRADFDYLHKKQSGGQGQYGRVIGYIEPLPAESGTKFEFQNMLVGQAVPSSFIPAIEKGFREAANSGALIGHPVENLRVVLTDGAAHAVDSSELAFKMASIYAFRHCYAASRPVILEPVMLVELKLPTEFQGAVAGDLNKRKGLIVGNDQDGDDCVLTAHVPLNNMFGYSTALRSMTQGKGEFTMEYKQHSPVSNDVQTQLINAYKGTQAAE | 816 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa5g00893 | 816 | FunFam | Elongation factor G | 524 | 600 | - | - | |
Vifa5g00893 | 816 | Gene3D | Translation factors | 408 | 526 | - | - | |
Vifa5g00893 | 816 | Gene3D | - | 601 | 806 | IPR014721 | - | |
Vifa5g00893 | 816 | ProSiteProfiles | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 65 | 402 | IPR000795 | GO:0003924|GO:0005525 | |
Vifa5g00893 | 816 | Gene3D | - | 356 | 404 | IPR027417 | - | |
Vifa5g00893 | 816 | Gene3D | - | 54 | 306 | IPR027417 | - | |
Vifa5g00893 | 816 | Gene3D | - | 722 | 792 | - | - | |
Vifa5g00893 | 816 | CDD | EFG_III | 521 | 596 | IPR009022 | - | |
Vifa5g00893 | 816 | Gene3D | Elongation Factor G (Translational Gtpase), domain 3 | 527 | 600 | - | - | |
Vifa5g00893 | 816 | SMART | EFG_C_a | 718 | 805 | IPR000640 | - | |
Vifa5g00893 | 816 | PRINTS | GTP-binding elongation factor signature | 138 | 148 | IPR000795 | GO:0003924|GO:0005525 | |
Vifa5g00893 | 816 | PRINTS | GTP-binding elongation factor signature | 69 | 82 | IPR000795 | GO:0003924|GO:0005525 | |
Vifa5g00893 | 816 | PRINTS | GTP-binding elongation factor signature | 190 | 199 | IPR000795 | GO:0003924|GO:0005525 | |
Vifa5g00893 | 816 | PRINTS | GTP-binding elongation factor signature | 118 | 126 | IPR000795 | GO:0003924|GO:0005525 | |
Vifa5g00893 | 816 | PRINTS | GTP-binding elongation factor signature | 154 | 165 | IPR000795 | GO:0003924|GO:0005525 | |
Vifa5g00893 | 816 | FunFam | Elongation factor G | 601 | 734 | - | - | |
Vifa5g00893 | 816 | FunFam | Elongation factor G, mitochondrial | 410 | 523 | - | - | |
Vifa5g00893 | 816 | Pfam | Elongation factor G C-terminus | 719 | 804 | IPR000640 | - | |
Vifa5g00893 | 816 | FunFam | Ribosome-releasing factor 2, mitochondrial | 61 | 303 | - | - | |
Vifa5g00893 | 816 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 64 | 303 | IPR027417 | - | |
Vifa5g00893 | 816 | CDD | mtEFG1_II_like | 428 | 508 | - | - | |
Vifa5g00893 | 816 | FunFam | Elongation factor G | 722 | 792 | - | - | |
Vifa5g00893 | 816 | NCBIfam | small GTP-binding protein domain | 68 | 240 | IPR005225 | GO:0005525 | |
Vifa5g00893 | 816 | SUPERFAMILY | Translation proteins | 366 | 518 | IPR009000 | - | |
Vifa5g00893 | 816 | Hamap | Elongation factor G [fusA]. | 63 | 809 | IPR004540 | GO:0003746|GO:0005525|GO:0006414 | |
Vifa5g00893 | 816 | SUPERFAMILY | EF-G C-terminal domain-like | 518 | 596 | IPR035647 | - | |
Vifa5g00893 | 816 | Pfam | Elongation factor Tu GTP binding domain | 67 | 399 | IPR000795 | GO:0003924|GO:0005525 | |
Vifa5g00893 | 816 | SUPERFAMILY | EF-G C-terminal domain-like | 718 | 809 | IPR035647 | - | |
Vifa5g00893 | 816 | Pfam | Elongation Factor G, domain III | 520 | 594 | IPR041095 | - | |
Vifa5g00893 | 816 | Pfam | Elongation factor Tu domain 2 | 441 | 507 | IPR004161 | GO:0005525 | |
Vifa5g00893 | 816 | SUPERFAMILY | Ribosomal protein S5 domain 2-like | 595 | 717 | IPR020568 | - | |
Vifa5g00893 | 816 | ProSitePatterns | Translational (tr)-type guanine nucleotide-binding (G) domain signature. | 111 | 126 | IPR031157 | - | |
Vifa5g00893 | 816 | CDD | EF-G | 69 | 401 | - | - | |
Vifa5g00893 | 816 | SMART | EFG_IV_2 | 596 | 716 | IPR005517 | GO:0005525 | |
Vifa5g00893 | 816 | CDD | EFG_mtEFG1_IV | 599 | 714 | IPR005517 | GO:0005525 | |
Vifa5g00893 | 816 | PANTHER | ELONGATION FACTOR G, MITOCHONDRIAL | 8 | 808 | - | - | |
Vifa5g00893 | 816 | CDD | mtEFG1_C | 721 | 798 | IPR035649 | - | |
Vifa5g00893 | 816 | Pfam | Elongation factor G, domain IV | 595 | 714 | IPR005517 | GO:0005525 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa5g00893 | Vifa-Chr5 | 264575519 | 264589967 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa5g00893 | 443 | 603 | Eukaryotic Initiation Factors Gene Family | AT3G22980 | 24.719 | 6.39e-09 | 57.8 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa5g00893 | K02355 | - | mnt:21404637 | 1210.67 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vifa5g00893 | 5 | 264575519 | 264589967 | Vifa5g00893 | 5 | 264575519 | 264589967 | ECH |