Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00893 ATGGTTCGCTTCTCCAGGTCCTCCGCGCACCGTCTTCTCCACGCACTATGCTCCTCCACCACCACAGTCTCTCCATCCCCAACCGGCTCCCTCATCGCCGCCACTTTCCACCTCCGACACTTCTCAGCCGGAAACGTCGCCCGTGCCAAGGCAGCATCAATTAACAAGGAGCCTTGGTGGATGGAGTCAATGGAAATGATTCGCAACATTGGTATCTCGGCACACATCGATTCCGGGAAGACGACTTTGACGGAGCGGATACTGTTCTACACTGGCCGGATTCACGAGATCCATGAGGTGAGAGGGAAGGATGGCGTTGGTGCCAAGATGGATTCCATGGTGTTGGAGAAACGGAAGGGAATCACTATTCAGTCTGCTGCTACAAATTGTACTTGGAAGGACTATAAGATCAACATAATTGACACACCTGGTCATGTTGATTTCACCATTGAGGTTGAAAGGGCTTTGCGTGTCCTTGATGGTGCCATTCTTGTGTTTTGTAGTGTTGGTGGGGTGCAAAGTCAGTCCATTACCGTTGATCGGCAAATGAGAAGATATGAGGTTCCAAGACTTGCATTTATTAACAAGCTTGATCGAATGGGAGCAGATCCATGGAAAGTAATAAATCAGGCTAGATCTAAGCTTCGGCATCATAATGCTGCAGTTCAAGTTCCCATAGGTTTGGAAAATGGTTTTAAGGGACTTGTTGATCTTGTGAAGCTAAAGGCCTATTATTTTCATGGTTCAAAAGGCGAAAAAGTTGTCATTGAAGAGGTGCCTTCGGATATGGAAGCGTTGGTGGCTGAAAAAAGACGCGAACTAATAGAAACCGTGTCAGACGTTGATGATATACTTGCTGAAGCGTTTCTTAGTGATAAAGCCATTTCAGATGCTGATCTTGAGGAATATCCTTGGTTTGTTTGTTTGATATTGAGTGATCATTATGGTCCTCCCTACGTTTCAAATCATGAGTCTACACCAGCAGCGCAAAAGAAAGTCGGTTGGTGTAGTCTGAAAGTTTCAGCCAGTGGCAGTGCAGCCGTTTGCATGCCCCTGGCCGGGGATAGAGCACCAAAGTCACCGGGAGCAATTCGTAGGGCTACCATAGCACAAAAATTTATACCGGTATTCATGGGTAGTGCTTTCAAAAACAAGGGAGTACAGTCACTTCTGGACGGAGTACTTAGTTATTTGCCATGTCCAACTGAAGTTAGTAATAATGCTCTTGACCAATCTAAGAACGAGGAGAAGATTGAGCTGACTGGAAGTCCTGATGGTCCCCTTGTAGCATTGGCTTTCAAATTGGAGGAAAATAAGTTTGGGCAGTTATCATATCTAAGAATTTATGAGGGCGTCCTTCGGAAGGGGGATTTTGTGACTAATGTTAACTCTGGCAAGAAGACCAAGATTTCTCGCTTGGGTCGGATGCATTCTAATGAAATACAGGACATTCAGGAGGCCCATGCTGGCAAAATAATTGCTGTATATGGTGTTGATTGTGCATCAGGAGATACTTTTACTGATGGGTCGGTTAAATACACAATGACTTCTATGAATGTTCCTGAGCCCGTGATGTCTTTAGCTGTACAGCCTGTCTCAAAAGAAGCTGGAGGGCAATTTTCAAAAGTTTTGAACCGCTTCCAAAGAGAGGATCCTACTTTCCGTGTTGGCTTGGACCCAGAGAGTGGGCAGACAATCATTTCTGGAATGGGAGAACTGCACTTAGAAATCTATGTTGAACGCATTAAGACGGAGTACAAGGTTGATGTTACAGTTGGAAAGCCCCGTGTGAACTTCAGAGAAACTGTTACTCAACGTGCTGATTTTGATTATTTACATAAGAAGCAATCCGGAGGGCAAGGACAATATGGACGGGTGATTGGGTATATCGAACCACTTCCTGCCGAGTCGGGAACTAAGTTTGAGTTTCAAAACATGCTGGTTGGCCAAGCTGTTCCATCAAGTTTTATCCCTGCAATTGAGAAAGGTTTTAGAGAAGCTGCCAACTCTGGTGCCTTAATTGGACATCCAGTTGAAAATCTCCGAGTTGTCTTGACAGATGGTGCTGCTCATGCTGTTGATTCCAGCGAACTTGCCTTTAAGATGGCTTCTATCTACGCTTTTAGACATTGTTACGCAGCTTCCAGACCAGTTATATTAGAACCTGTTATGCTTGTTGAGCTGAAATTACCAACAGAATTTCAAGGAGCTGTTGCTGGTGACCTCAACAAGAGAAAAGGTCTGATTGTTGGCAATGATCAGGATGGGGATGATTGTGTCCTTACAGCTCATGTCCCTCTTAACAATATGTTTGGGTATTCTACAGCTCTTCGTTCGATGACACAGGGAAAGGGTGAATTCACAATGGAATATAAGCAACATTCACCGGTTTCCAATGATGTACAGACCCAATTGATAAACGCATACAAGGGGACTCAGGCGGCTGAATGA 2451 0.4492 MVRFSRSSAHRLLHALCSSTTTVSPSPTGSLIAATFHLRHFSAGNVARAKAASINKEPWWMESMEMIRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGKDGVGAKMDSMVLEKRKGITIQSAATNCTWKDYKINIIDTPGHVDFTIEVERALRVLDGAILVFCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVINQARSKLRHHNAAVQVPIGLENGFKGLVDLVKLKAYYFHGSKGEKVVIEEVPSDMEALVAEKRRELIETVSDVDDILAEAFLSDKAISDADLEEYPWFVCLILSDHYGPPYVSNHESTPAAQKKVGWCSLKVSASGSAAVCMPLAGDRAPKSPGAIRRATIAQKFIPVFMGSAFKNKGVQSLLDGVLSYLPCPTEVSNNALDQSKNEEKIELTGSPDGPLVALAFKLEENKFGQLSYLRIYEGVLRKGDFVTNVNSGKKTKISRLGRMHSNEIQDIQEAHAGKIIAVYGVDCASGDTFTDGSVKYTMTSMNVPEPVMSLAVQPVSKEAGGQFSKVLNRFQREDPTFRVGLDPESGQTIISGMGELHLEIYVERIKTEYKVDVTVGKPRVNFRETVTQRADFDYLHKKQSGGQGQYGRVIGYIEPLPAESGTKFEFQNMLVGQAVPSSFIPAIEKGFREAANSGALIGHPVENLRVVLTDGAAHAVDSSELAFKMASIYAFRHCYAASRPVILEPVMLVELKLPTEFQGAVAGDLNKRKGLIVGNDQDGDDCVLTAHVPLNNMFGYSTALRSMTQGKGEFTMEYKQHSPVSNDVQTQLINAYKGTQAAE 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00893 816 FunFam Elongation factor G 524 600 - -
Vifa5g00893 816 Gene3D Translation factors 408 526 - -
Vifa5g00893 816 Gene3D - 601 806 IPR014721 -
Vifa5g00893 816 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 65 402 IPR000795 GO:0003924|GO:0005525
Vifa5g00893 816 Gene3D - 356 404 IPR027417 -
Vifa5g00893 816 Gene3D - 54 306 IPR027417 -
Vifa5g00893 816 Gene3D - 722 792 - -
Vifa5g00893 816 CDD EFG_III 521 596 IPR009022 -
Vifa5g00893 816 Gene3D Elongation Factor G (Translational Gtpase), domain 3 527 600 - -
Vifa5g00893 816 SMART EFG_C_a 718 805 IPR000640 -
Vifa5g00893 816 PRINTS GTP-binding elongation factor signature 138 148 IPR000795 GO:0003924|GO:0005525
Vifa5g00893 816 PRINTS GTP-binding elongation factor signature 69 82 IPR000795 GO:0003924|GO:0005525
Vifa5g00893 816 PRINTS GTP-binding elongation factor signature 190 199 IPR000795 GO:0003924|GO:0005525
Vifa5g00893 816 PRINTS GTP-binding elongation factor signature 118 126 IPR000795 GO:0003924|GO:0005525
Vifa5g00893 816 PRINTS GTP-binding elongation factor signature 154 165 IPR000795 GO:0003924|GO:0005525
Vifa5g00893 816 FunFam Elongation factor G 601 734 - -
Vifa5g00893 816 FunFam Elongation factor G, mitochondrial 410 523 - -
Vifa5g00893 816 Pfam Elongation factor G C-terminus 719 804 IPR000640 -
Vifa5g00893 816 FunFam Ribosome-releasing factor 2, mitochondrial 61 303 - -
Vifa5g00893 816 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 64 303 IPR027417 -
Vifa5g00893 816 CDD mtEFG1_II_like 428 508 - -
Vifa5g00893 816 FunFam Elongation factor G 722 792 - -
Vifa5g00893 816 NCBIfam small GTP-binding protein domain 68 240 IPR005225 GO:0005525
Vifa5g00893 816 SUPERFAMILY Translation proteins 366 518 IPR009000 -
Vifa5g00893 816 Hamap Elongation factor G [fusA]. 63 809 IPR004540 GO:0003746|GO:0005525|GO:0006414
Vifa5g00893 816 SUPERFAMILY EF-G C-terminal domain-like 518 596 IPR035647 -
Vifa5g00893 816 Pfam Elongation factor Tu GTP binding domain 67 399 IPR000795 GO:0003924|GO:0005525
Vifa5g00893 816 SUPERFAMILY EF-G C-terminal domain-like 718 809 IPR035647 -
Vifa5g00893 816 Pfam Elongation Factor G, domain III 520 594 IPR041095 -
Vifa5g00893 816 Pfam Elongation factor Tu domain 2 441 507 IPR004161 GO:0005525
Vifa5g00893 816 SUPERFAMILY Ribosomal protein S5 domain 2-like 595 717 IPR020568 -
Vifa5g00893 816 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 111 126 IPR031157 -
Vifa5g00893 816 CDD EF-G 69 401 - -
Vifa5g00893 816 SMART EFG_IV_2 596 716 IPR005517 GO:0005525
Vifa5g00893 816 CDD EFG_mtEFG1_IV 599 714 IPR005517 GO:0005525
Vifa5g00893 816 PANTHER ELONGATION FACTOR G, MITOCHONDRIAL 8 808 - -
Vifa5g00893 816 CDD mtEFG1_C 721 798 IPR035649 -
Vifa5g00893 816 Pfam Elongation factor G, domain IV 595 714 IPR005517 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00893 Vifa-Chr5 264575519 264589967 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00893 443 603 Eukaryotic Initiation Factors Gene Family AT3G22980 24.719 6.39e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00893 K02355 - mnt:21404637 1210.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g00893 5 264575519 264589967 Vifa5g00893 5 264575519 264589967 ECH