Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00888 ATGAACCTAAGATACGAACAGAGGCTCCAGGTCGCTGCTAGAATAATCCTCGACCACGATGCACGTCCCGGCGACGCGCCTCCCAGTGAAGAAGAGCTTGGGATTAAGGCAATTCTTAAGCCACATCAAGTAGAAGGGGTTTCGTGGCTCATACGGAGGTATAAACTCGGCGTCAACGTTGTCCTTGGGGATGAGGTATATACTCTTCATTCAATTCTGTATCAAAGCCTCTATATGGGATTGGGAAAGACACTGCAAGCTATCTCTTTTTTAAGCTATTTGAAAGTGCACCAGTTATCACATGGGCCATTTTTGGTTTTATGCCCTTTAAGTGTGACGGATGGTTGGGTGTCTGAGATAGTCAAATATGCCCCTAAACTAGAAGTGTTAAAATATGTTGGTGATAAAGAACATAGGCGCAGTCTACGTATGAAAACACATGAACATGTAACAAGGAAGCCAACACATGATGTCAGTTTGCCTTTTGATGTGCTGTTAACAACGTATGACATTGCACTAATGGATAAGGATTTTCTTTCTCAAATACCATGGCAGTATGCAATCATTGATGAAGCCCAAAGACTAAAAAACCCGTCAAGTGTTTTATTTAATGTTCTCAAAGATCGCTATATCATGCCGAGACGGTTGTTGATGACGGGCACACCTATTCAGAATAACCTTTCTGAACTGTGGGCTTTGATGTATTTTTGCATGCCATCTGTGTTTGGGACACTAAATCAGTTCCTTTCTACATTCAAGGACATCAGTGATCTTACCTCAGTTAATGATTCTCCAAAGGTTAAAGAGCGACTTCAAATCCTGAGAAATGTATTGGCTGCTTTTATGCTTCGACGAACCAAATCAAAGCTTATGGAGTCTGGAAGTTTAGTGCTGCCACCTCTCACTGAGACAACTGTGTTAGTACCCCTTGTCAGCCTGCAAAAAAAGGTTCACATGTCAATACTGAGGAAGGAGCTTCCAAAGCTAGTTGCACTATCTTCTGGGACATCAAATCATCAATCACTACAGAATACTGTGATGCAACTAAGAAAAGCATGCAGCCATCCTTATCTCTTTCCGGGTATTGAACCCGAACCTTATGAAGAAGGCGAACATCTGGTTCAGGCCAGTGGTAAACTGTTGATTCTGGACCAACTTCTTCGAAAGCTACATCATTCTGGACACCGTGTTCTTCTTTTTGCACAGATGACACATACGCTTGACATTTTGCAGGATTTTCTGGAGTTACGTAAGTATTCTTACGAACGTCTCGATGGATCAATTAGAGCAGAGGAGCGCTTTGCTGCAATAAGAAGTTTCAGCAACTCATCAACTAATATGGGCTTGAATTTTGAAACTGGCCGAAATGGAGCTTTTGTTTTTATGATCTCAACAAGAGCCGGGGGAGTTGGCTTGAATCTTGTGGCTGCTGATACTGTTATATTCTACGAGCAAGATTGGAACCCTCAGGTGGACAAACAAGCTTTGCAGAGAGCCCATAGAATTGGCCAGATGAATCATGTTTTGTGTATAAACCTTGTTACTGAACATACAGTGGAGGAAGTAATTATGCGGAGGGCAGAAAGAAAATTGCAGCTGAGTCTCAATGTAACTGGTGATGATATTCTAGAAAATGAAGATAAAAATTTATCTTCAGTTGGAACGAGTGATTTGAAATCCATCATTGTTGGGTTACGTATGTTTGATCCCAATGAGATCAATGATGGAAAAGACAAGGACATGGACTTAACAGAAATTAATGCAATGGCTGAGAAAATAATTGCTATCCGCGATGAACAAATATTTGATAAGGACGATAGGAAATTTGAGGTGAATCCAAGAAACTTTTTAAAAGGATATGATATTAAGGAAAGAGGTTCGGCTTCTCTCTCTCGTGATCTTGATCTTGATGAGGCTTCTTATCTTTCTTGGGTTAAAAAATTTGAGGAAATTGCTAAATCAAGTAGCGAATCAATCACTGACTTGAGAAGCAGAAGGAACTCAGATGAGGATAAGAGTCAAAAACTAGAGATTGCAAAGCAGAAGGCAGAAGAAAAGAAGCTGTCTAAGTGGAATGCCGTTGGATACCATTCTTTAAATGTTAAAGACCCTATTAGCCCACCAGACGGGGATGTCATATTAGATGCTGGTTCTGTTCATTTTGTGTATGGAGATTGTACAACTCCCGCAAACGTTTCTTCATCTGATCCGACTATAATCTTTAGCTGTGTTGACACTTCTGGACGTTGGGGCCATGGTGGAATGTTTGATGCACTAACCAAACTTTCACCGAACATCAGTGATGCATATGAACGGGCTTCTGAACATGGGGATTTGCATCTTGGTGATCTCCATCTTATAAGGCTTGAAGATGGCTGTGATGATCAAAATTTGGATGGTAATGCTCCCAAAATGGTTGCTTTAGCTGTGGTTCAATCTTACAACCCAAGGCGTAATGTCCCTCGAAGTGAAATCTCACTTGTCCACTTGGAAAGCTGCTTATTAAAGGCAGCGTTCTCAGCTGCTCAAAATTCTGCATCAATACACATGCCACGGATTGGTTATCAAGATGGATCTGATCGTTCTCAATGGTACACCATAGAACGTCTTCTAAGAAAATATGCCTCCATGTACAACATAAATATATACGTGTATTATTATCGAAGATCACGATAA 2676 0.4088 MNLRYEQRLQVAARIILDHDARPGDAPPSEEELGIKAILKPHQVEGVSWLIRRYKLGVNVVLGDEVYTLHSILYQSLYMGLGKTLQAISFLSYLKVHQLSHGPFLVLCPLSVTDGWVSEIVKYAPKLEVLKYVGDKEHRRSLRMKTHEHVTRKPTHDVSLPFDVLLTTYDIALMDKDFLSQIPWQYAIIDEAQRLKNPSSVLFNVLKDRYIMPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTLNQFLSTFKDISDLTSVNDSPKVKERLQILRNVLAAFMLRRTKSKLMESGSLVLPPLTETTVLVPLVSLQKKVHMSILRKELPKLVALSSGTSNHQSLQNTVMQLRKACSHPYLFPGIEPEPYEEGEHLVQASGKLLILDQLLRKLHHSGHRVLLFAQMTHTLDILQDFLELRKYSYERLDGSIRAEERFAAIRSFSNSSTNMGLNFETGRNGAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLCINLVTEHTVEEVIMRRAERKLQLSLNVTGDDILENEDKNLSSVGTSDLKSIIVGLRMFDPNEINDGKDKDMDLTEINAMAEKIIAIRDEQIFDKDDRKFEVNPRNFLKGYDIKERGSASLSRDLDLDEASYLSWVKKFEEIAKSSSESITDLRSRRNSDEDKSQKLEIAKQKAEEKKLSKWNAVGYHSLNVKDPISPPDGDVILDAGSVHFVYGDCTTPANVSSSDPTIIFSCVDTSGRWGHGGMFDALTKLSPNISDAYERASEHGDLHLGDLHLIRLEDGCDDQNLDGNAPKMVALAVVQSYNPRRNVPRSEISLVHLESCLLKAAFSAAQNSASIHMPRIGYQDGSDRSQWYTIERLLRKYASMYNINIYVYYYRRSR 891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00888 891 CDD SF2_C_SNF 371 514 - -
Vifa5g00888 891 SUPERFAMILY Macro domain-like 719 886 IPR043472 -
Vifa5g00888 891 Gene3D - 21 296 IPR038718 -
Vifa5g00888 891 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 64 240 IPR014001 -
Vifa5g00888 891 Pfam SNF2-related domain 42 358 IPR000330 GO:0005524|GO:0140658
Vifa5g00888 891 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1-LIKE 31 611 IPR031053 GO:0003678|GO:0006281|GO:0006338
Vifa5g00888 891 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 25 285 IPR027417 -
Vifa5g00888 891 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 549 IPR027417 -
Vifa5g00888 891 FunFam Putative helicase CHR10 296 607 - -
Vifa5g00888 891 Gene3D Leucine Aminopeptidase, subunit E, domain 1 718 891 IPR043472 -
Vifa5g00888 891 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 382 551 IPR001650 -
Vifa5g00888 891 Coils Coil 666 686 - -
Vifa5g00888 891 SMART ultradead3 35 248 IPR014001 -
Vifa5g00888 891 Pfam Helicase conserved C-terminal domain 379 503 IPR001650 -
Vifa5g00888 891 CDD Macro_Poa1p-like_SNF2 718 876 - -
Vifa5g00888 891 Gene3D - 297 608 IPR027417 -
Vifa5g00888 891 SMART helicmild6 408 503 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00888 Vifa-Chr5 261891939 261910926 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00888 377 533 RAD5 or RAD16-like Gene Family AT5G22750 34.395 3.99e-20 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vifa5g00888 SNF2_N 2.2e-47 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00888 K20092 - gmx:100797182 1329.69