Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00882 ATGGGGAGTATGGGTGAGCATGATAGAAAACGGCGGCACTTTAGCTCCTTGTCACCCACACCTGAACCTGCTAAGAAGTTGCCATTCTTGCCAGTTTCTGAAGATAAAAAGCTTGATATTGCTGTACTTCAGTATCAGAATCAAAAGCTTACACAGAAATTAGAGACTCAGAAGTTAGAGTATGCAACTTTTGAGAATAAATTTTCTCAACTTAAGGAGAGGCAACAGTCATATGATTCTACTTTAGCAGTGGTCAAGAAGTCTTGGGAGCAGCTGGTTAATGATTTAGAGTCAAGTTCTGAACGCAAAAGGGAGTCTAACCGCAAAGCAGATTCCAAATTTGTATCAAGTACAGATGATGGTAGTTCGTCTACTGTTCAAGATGTTTTTCTTAGCCGACTTTTGCAAACTGGTGCAACTGAAAGTTCCTCCTCTTCTCACTTTGCAAATGAGAGGGAGCAACATAGAGAAATTACTGCTGAAAAAGCTAAAAGCATTTTGAATAATATATTGACATTTATTAATAACTTTCGGTGTTTGAAAGATGGATTTCATACTGCACTACTGAAAAAACTTCGAGGAGATGTTTCATGTGGGCAGATGTTATCCAATGATCTGGAGGTGGAAAGTAAAAAATTGAGATTGACATTAAGTGAACTTCACTTAAAGCACAAGTCTTTAGCAAGTGTTTTCCGAATTCAGAGGGATCTGGATGCAAAAAATAAAGCCGAGCTTAGACAATTAAAAGGGGAACTGGAAAGCGCAGTCTCAGAGTTAGAAGAAAACAATCACAAACTTGCCACTCTTAAGGTAGAAAAGGATGCAGCCAAAGGGGCAGTTCTTCCGGTATTAACTGTTGGGAATACACACATTCCTAATGACAAGATCAGAGATAAACAAAAGGATTTACAAGATATGGAATCTACTTTGAAGGAGCTATTGAACCGAGCATCAACACGATTATTGGAACTGAAAAGTCTTCATGAGGAAAGAATAAGGCTTTTACAGCAGTTGTGTGATCTACAGAACACATTGAAGAATTTGAAGTGTATTACCTCTTCCCATGCGTTCCAATTGGTTAAAGATCATATAGAAAAATCCAAATCTGAAGTGCAGGAGTATCAAGCCTTATATGAGAAACTACAGGCTGAGAAGGATAATCTTGCATGGAGGGAAAGGGAGTGGTACATTAAAAATGATTTAGCTGATCTTTTTGAAAGATCTGTGACAGTTTCTGATCTTAGAGTTGCTGATATACGCACTGAGATACAGAAAATGATCGAGCGAAAAAATGTGATTGAAAACAAGCTGAAAGAGGAAGCAAGAGAACAGGGAAGGAAAGAAATTATTGCCGAATTTAAATCTCTGCTTTCTTCGTTTCCTGAGGAAATGGGATCCATGCAAAGTCAACTTAGTAAGTATAAAGAATCAGCTTCAGATCTCCATTCTCTACGTGCCGATGTGCATTCTATTTCCGGTACTCTTGATCGGAAGGTAAAAGAATGTGACACATTATCTGTTAGGTCTGCTGGTCAAATTGCTGAGATAAACAGACTGCTTGCTGTGGTTCAAGATTTGCGAGTGACTCAGGATGAGATGAAGTTGATACTGCGAATGTACAGACACGAGACCATTGATTCAAGGGATGTCATGGAAGCAAGGGAAGCAGAATACAGAGCATGGGCACATGTTCAAAGTTTGAAATCATCTCTTGATGAGCATAACTTAGAACTTCGAGTTAAAACAGCAAATGAGTCAGAAGCCAGATCACAGCAAAATCTTGCTGCGGCTGAAGCTGAGATCGCAGACATGAGACATAAATTAGATGATTCCAAAAGGGAGATGTGTAAAATGTCTGATGGTTTGAGATCTAAAAATGAAGAAAATGAAGCCTACTTATCTGAAATAGAGACTATTGGACAAGCATATGATGACATGCAAACCCAAAACCAACATCTGTTGCATCAAATTACTGAGAGAGATGATTACAATATTAAGCTTGTTTTAGAAGGTGTAAGGGCTAGACAAAAACAAGATTCTTTGATTATAGAGAAGCGATTAATGGAACAAGAGAACCAACAATCAAATGTATCTTTGAATTTATGCAATACCAAAGCTGCAAGAATTGAAGACCAGTTGAGGTTTTGCTCAGATCAGATTCAGAAACTTGAGGACAACAAACTTCAAAATTCTGGCTGTTTGGAAAACACCCAAAGAAGACTGTCGGATATTATACCATCATCGCAACAGGTTAGGGATTCAGTGGTGGAATTGCAAGCTAGAATTACCAGTAGTCGGGTGACTCGTATGGAGTTACAAACCGAACTTGAGAAAGAAAGGTTTGCCCAAAAAACAGTAGAGGAAGATCTGGAGGTTGCTAGGAGAAACTTGTCACAACTTAAAGCACAAAATGAGGATTCCTCGGTGACTGATAAGCTTCAACAGGAACTTGGAGAGTACAGGGAAATTGTCAAGTGCAGTATCTGTCGAGACAGGACAAAAGAGGTGGTAATTACAAAATGCTACCACTTGTTCTGCAACTCATGTATCCAGAAAATTGCTGGGAGTCGACAGCGCAAATGTCCACAATGTGGTGCATGCTTCGGGGCCAATGATATTAAGCCGGTTTATTTGTAA 2637 0.3906 MGSMGEHDRKRRHFSSLSPTPEPAKKLPFLPVSEDKKLDIAVLQYQNQKLTQKLETQKLEYATFENKFSQLKERQQSYDSTLAVVKKSWEQLVNDLESSSERKRESNRKADSKFVSSTDDGSSSTVQDVFLSRLLQTGATESSSSSHFANEREQHREITAEKAKSILNNILTFINNFRCLKDGFHTALLKKLRGDVSCGQMLSNDLEVESKKLRLTLSELHLKHKSLASVFRIQRDLDAKNKAELRQLKGELESAVSELEENNHKLATLKVEKDAAKGAVLPVLTVGNTHIPNDKIRDKQKDLQDMESTLKELLNRASTRLLELKSLHEERIRLLQQLCDLQNTLKNLKCITSSHAFQLVKDHIEKSKSEVQEYQALYEKLQAEKDNLAWREREWYIKNDLADLFERSVTVSDLRVADIRTEIQKMIERKNVIENKLKEEAREQGRKEIIAEFKSLLSSFPEEMGSMQSQLSKYKESASDLHSLRADVHSISGTLDRKVKECDTLSVRSAGQIAEINRLLAVVQDLRVTQDEMKLILRMYRHETIDSRDVMEAREAEYRAWAHVQSLKSSLDEHNLELRVKTANESEARSQQNLAAAEAEIADMRHKLDDSKREMCKMSDGLRSKNEENEAYLSEIETIGQAYDDMQTQNQHLLHQITERDDYNIKLVLEGVRARQKQDSLIIEKRLMEQENQQSNVSLNLCNTKAARIEDQLRFCSDQIQKLEDNKLQNSGCLENTQRRLSDIIPSSQQVRDSVVELQARITSSRVTRMELQTELEKERFAQKTVEEDLEVARRNLSQLKAQNEDSSVTDKLQQELGEYREIVKCSICRDRTKEVVITKCYHLFCNSCIQKIAGSRQRKCPQCGACFGANDIKPVYL 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00882 878 Coils Coil 242 272 - -
Vifa5g00882 878 Coils Coil 40 74 - -
Vifa5g00882 878 MobiDBLite consensus disorder prediction 96 124 - -
Vifa5g00882 878 MobiDBLite consensus disorder prediction 1 29 - -
Vifa5g00882 878 CDD RING-HC_Bre1-like 819 876 - -
Vifa5g00882 878 ProSitePatterns Zinc finger RING-type signature. 841 850 IPR017907 -
Vifa5g00882 878 Coils Coil 783 810 - -
Vifa5g00882 878 SMART ring_2 826 864 IPR001841 -
Vifa5g00882 878 Coils Coil 580 614 - -
Vifa5g00882 878 Coils Coil 364 391 - -
Vifa5g00882 878 ProSiteProfiles Zinc finger RING-type profile. 826 864 IPR001841 -
Vifa5g00882 878 Coils Coil 416 443 - -
Vifa5g00882 878 Coils Coil 296 316 - -
Vifa5g00882 878 Coils Coil 706 726 - -
Vifa5g00882 878 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 807 878 IPR013083 -
Vifa5g00882 878 MobiDBLite consensus disorder prediction 1 16 - -
Vifa5g00882 878 PANTHER RING FINGER PROTEIN-RELATED 1 878 IPR013956 GO:0004842|GO:0010390
Vifa5g00882 878 SUPERFAMILY RING/U-box 818 877 - -
Vifa5g00882 878 Pfam Zinc finger, C3HC4 type (RING finger) 826 864 IPR018957 GO:0046872
Vifa5g00882 878 MobiDBLite consensus disorder prediction 96 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00882 Vifa-Chr5 260091600 260107577 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00882 743 877 C3H Transcription Factor Family AT2G42030 26.619 5.53e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00882 K10696 - gmx:100790337 1309.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g00882 5 260091600 260107577 Vifa5g00882 5 260091600 260107577 ECH