Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00881 ATGAGAGCATGGGGAAAATATGTATCTGAGATCAGAGAGCCAAGAAAGAAATCAAGAATATGGCTTGGAACATACCCTACACCTGAAATGGCTGCTAGGGCTCATGATGTAGCTGCTTTAGCCATAAAGGGTCATTCAGCTTATCTCAACTTCCCTAACTTGGCTCAAAATCTTCCAAGGCCTTCAACAACATCACCTAAAGACATTCAACTTGCAGCTGCAAAAGCAGCAGCTACTGTTTTTGTGGAAATTAGGGATTCTTGTCAAGTTGAAGAAAATGGTCAAGATCAAGTTTCAAGTTCAATAGAGAATGTTCAAGACGGACTTCGGCTCGACGAACAATTTTTATCGACGTGGGAGTATTACTAA 369 0.4092 MRAWGKYVSEIREPRKKSRIWLGTYPTPEMAARAHDVAALAIKGHSAYLNFPNLAQNLPRPSTTSPKDIQLAAAKAAATVFVEIRDSCQVEENGQDQVSSSIENVQDGLRLDEQFLSTWEYY 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00881 122 ProSiteProfiles AP2/ERF domain profile. 1 52 IPR001471 GO:0003700|GO:0006355
Vifa5g00881 122 SUPERFAMILY DNA-binding domain 2 53 IPR016177 GO:0003677
Vifa5g00881 122 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 1 99 - -
Vifa5g00881 122 Gene3D AP2/ERF domain 1 53 IPR036955 GO:0003700|GO:0006355
Vifa5g00881 122 CDD AP2 1 54 IPR001471 GO:0003700|GO:0006355
Vifa5g00881 122 SMART rav1_2 1 58 IPR001471 GO:0003700|GO:0006355
Vifa5g00881 122 Pfam AP2 domain 3 45 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00881 Vifa-Chr5 259576338 259576865 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00881 1 77 AP2-EREBP Transcription Factor Family AT2G44940 83.117 1.47e-40 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa5g00881 AP2 5e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00881 - - psat:127129327 199.904
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g00881 5 259576338 259576865 Vifa5g00881 5 259576338 259576865 ECH