Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00851 ATGGCTGCCAATTTCTGGACATCATCTCATTACAAGCATCTTCTGGATCAAGAAGATGTGGATATGGTGAATCCACTTGATAAAGAAAAGGGTGTCACACTTGAGGATTTTAAGCTCATTAAGATGCACATGTCAAATTATATTCTGAAGTTGGCTCAACAAGTAAAAGTGAGGCAGAGGGTTGTTGCTACTGCAGTTACTTACATGAGGCGTGTTTACACAAGGAAGAGTATGACAGATTATGATCCACGCCTGGTAGCTCCAACCTGCTTGTATCTGGCATCAAAAGCAGAAGAAAGCACAGTGCAGGCTAGGCTGCTTGTATTTTACATTAAGAAATTATATGCTGATGATAAATATAGGTATGAAATCAAGGATATACTTGAAATGGAAATGAAGATTTTAGAAGCATTGGACTATTACCTGGTTGTATTCCACCCATACCGTTCCCTCTCCGGGTTTCTTCAAGATGCGGGTTTGAACGATTTAAGCATGACTCAACTAACTTGGGGGCTTGTTAATGACACATACAAGATGGACCTAATACTTGTACATCCACCCCATCTGATTGCCTTAGCTTGCATATACATTGCTAGTGTACTCAGGGAGAAAGACACCACTGTTTGGTATGAAGAACTTCGAGTTGATATGAATGTGATTAAGAACATATCAATGGAGATACTTGATTTTTATGAAAGCAACAGAATGTTCACTGATGAGAGAATCAATGCTGCTCTCCACAAGCTATGA 750 0.3947 MAANFWTSSHYKHLLDQEDVDMVNPLDKEKGVTLEDFKLIKMHMSNYILKLAQQVKVRQRVVATAVTYMRRVYTRKSMTDYDPRLVAPTCLYLASKAEESTVQARLLVFYIKKLYADDKYRYEIKDILEMEMKILEALDYYLVVFHPYRSLSGFLQDAGLNDLSMTQLTWGLVNDTYKMDLILVHPPHLIALACIYIASVLREKDTTVWYEELRVDMNVIKNISMEILDFYESNRMFTDERINAALHKL 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00851 249 PIRSF Cyclin_C_H_G 1 249 - -
Vifa5g00851 249 Gene3D - 7 240 - -
Vifa5g00851 249 SMART cyclin_7 149 229 IPR013763 -
Vifa5g00851 249 SMART cyclin_7 46 136 IPR013763 -
Vifa5g00851 249 Pfam Cyclin, N-terminal domain 43 142 IPR006671 -
Vifa5g00851 249 CDD CYCLIN_AtCycC_rpt1 35 141 - -
Vifa5g00851 249 Gene3D - 19 143 - -
Vifa5g00851 249 SUPERFAMILY Cyclin-like 4 144 IPR036915 -
Vifa5g00851 249 FunFam cyclin-C1-2-like isoform X1 19 143 - -
Vifa5g00851 249 PANTHER CYCLIN 30 234 IPR043198 GO:0006357|GO:0016538
Vifa5g00851 249 SUPERFAMILY Cyclin-like 146 241 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00851 Vifa-Chr5 249503412 249506602 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00851 60 199 Core Cell Cycle Gene Families AT5G27620 30.000 1.47e-12 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00851 K15161 - gmx:100784345 457.988