Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00848 ATGGCCTCAAACAACATAACTTCAACATCAAGATCTAAAAAACAACATGGAGAGGCTGTTATTGACGATCGTCAAATCTTGACGAACAAAATACATTCGTTAAAAGAAAAGATCCAAAACGAACGATTTAAATCAATTAAAGATAAACTTTGGATAAATAGGGAAAATATTCGGTTTCAACTTTCTGAGGTCATGGCAGCGGTGTCAAGAAATACCTCATTACAGACCGAGGAAGTTAACGCTAAAATGCTTTCTTTAAGAATTGACAATCCTGTCAGTAAGTTTAGTGGTTTCCGTCAAGGTTTAGGAAGGAGAGAACAAATACAAAATCAAGATGTATCCTTTGAGAAAAGTTTCAAGTTACCATACACTGAAAAGATACCTCCATATACATTTTGGTTACATTTAGCCAGGAATGAGAGAATGACCAAAGATCAATCATTTGCGGCTAGAAGAAACATATACTATCAACATGGTGGTGAGACATCGATATGTAGTGACACCGAAGAAGAGTGCAAAGAGAATAAAGAAGCTAAACATGATTTTTCTCAGGGTGAAGACCAAATTCTATGGATGGCATTTGAGGAACACGAATTTACCGAGGAGGCCTTGAGTGTTGTTCAGAGCTGTATTGGGGGCACCTACTCAGAGATTCAGGAGAGGTATAAATATCTCAAGGAAAAGGACATGCATGCTAAAAATTCTCGAGAAAGTGAATCTATTACTGGAATATGTTTGGACAAAAGTTTGAGTGCCAGTTTAAGTACTTTTGATCACCTTTTCTGTCGTCGTTGCATGATCTATGATTGTCCTTTACATGGATGTTCACAACCCTTAATATATCCTAGTGAAAAGCAATCAGTTTGGAATGAACCAGAAGGTGAGAGTAAACCCTGCAGTGATAATTGTTACCTTAAGATAAAGGATGTCAATACTTCATCAGAAAAACCAATTCTAGAGTCTTCTCCAGATAAAGAAATAAAAAAATCAGAAAATGTTGAAATGGATTATCATTTAGATCTCAATTCAGATGTCAAGGTCTCAGATCTGCCAGACCCAGACTTATCATCATGTAACTCAACTTTTCCTGGTGAATCTCAAAATTCTCAAAAAAAGCTGAAGCTAATCCTAGAGAGCAAAGAAACTGCAAATGGAGATTATAACAAAGAACGTGCGGAAATCGCAGATAAAATAGAATTGTTGCAATTATCCAACTCAATGGAATGGCAAGTTGATGAGATGCATAGTATATCAGATTGGAAACCTTTAGAGAAAGATTTATATTTGAAGGGAATTGAAATGTTTGGGAGAAACAGTTGTCTTATATTTCGAAACTTACTTTCTGGATTCAAGACTTGCATGGAAATAGCCAGCTACATGCGTGTTGAAGAGGCCGCCCGTAGATCCATGGATGAAAATGGAAAATTTGATGCAAAGTGCACTGACCATGAGAGGCCGTCAAGTTTAAGGTCATTTAAAAAAAAAGGAAAGAGCAAGCAGTTTAAATATTTACCAAAGTCTCGACGCCTCCCAGCTAAGCCGGAAAGAATGAATGCGGGAGGAAACATACTCCTTCCGCATTATACACCTTGTGAGTGTCAAGGAAAGTGTGGAAAGCAATGTCCTTGTCGTCTTAATGGATATTGCTGTGAAAAGTATTGTGGGTGCGCTAAACAATGCGGAAATCGGTTCAGAGGATGCCATTGTGTTATAACTCAATGCAGAAAACGAAACTGTCCATGCTTTGCAGCACAGCGGGAATGTGACCCAGATGTCTGTAGAAATTGTTGGGTTAGTTGTGGTGATGGTTCATTAGGAGAGCCACCTCTTCGTGGAGAAAATGAATGTGAAAATATGAATCTTCTTTTAGGGAAAAAGCAAAGGCTTCTTTTAGCCAAGTCTGATGTTGCTGGATGGGGAGTCTTCTTAAAGAATCCTGCCAACAAAGATGATTTTTTAGGAGAGTACACAGGTGAGTTAATATCTCATACAGAAGCAGAGAAGCGTGGCAAATTGTATGAGCGTGCGGACTTCTCTTTTCTTTTTGACTTGGATGATGAGTATGTTATCGATGCTTATCGCAAAGGAGACAAGTTAAAATTTGCAAACCACTCCTACAAACCCAACTGTTATGCAAGGGGTATGTTTGTTCGTGGAGACCACCGAGTAGCCATATTTGCTAATGAACGCATTGAAGCTGGTGAGGAAATTTTCTATGATTACAAGTATGCTGCAAATCACAGAGCACCTGCATGGTTTGTTAAAGCCAATAATGCTGCCAAGAAAAAAGAAGCTGCAAATTCTCATGGCAACGCCAAGAAACGCTAG 2328 0.3849 MASNNITSTSRSKKQHGEAVIDDRQILTNKIHSLKEKIQNERFKSIKDKLWINRENIRFQLSEVMAAVSRNTSLQTEEVNAKMLSLRIDNPVSKFSGFRQGLGRREQIQNQDVSFEKSFKLPYTEKIPPYTFWLHLARNERMTKDQSFAARRNIYYQHGGETSICSDTEEECKENKEAKHDFSQGEDQILWMAFEEHEFTEEALSVVQSCIGGTYSEIQERYKYLKEKDMHAKNSRESESITGICLDKSLSASLSTFDHLFCRRCMIYDCPLHGCSQPLIYPSEKQSVWNEPEGESKPCSDNCYLKIKDVNTSSEKPILESSPDKEIKKSENVEMDYHLDLNSDVKVSDLPDPDLSSCNSTFPGESQNSQKKLKLILESKETANGDYNKERAEIADKIELLQLSNSMEWQVDEMHSISDWKPLEKDLYLKGIEMFGRNSCLIFRNLLSGFKTCMEIASYMRVEEAARRSMDENGKFDAKCTDHERPSSLRSFKKKGKSKQFKYLPKSRRLPAKPERMNAGGNILLPHYTPCECQGKCGKQCPCRLNGYCCEKYCGCAKQCGNRFRGCHCVITQCRKRNCPCFAAQRECDPDVCRNCWVSCGDGSLGEPPLRGENECENMNLLLGKKQRLLLAKSDVAGWGVFLKNPANKDDFLGEYTGELISHTEAEKRGKLYERADFSFLFDLDDEYVIDAYRKGDKLKFANHSYKPNCYARGMFVRGDHRVAIFANERIEAGEEIFYDYKYAANHRAPAWFVKANNAAKKKEAANSHGNAKKR 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00848 775 CDD SET_EZH 627 743 - -
Vifa5g00848 775 Pfam CXC domain 566 597 IPR041355 -
Vifa5g00848 775 SMART CXC_2 562 599 IPR033467 -
Vifa5g00848 775 ProSiteProfiles SET domain profile. 627 742 IPR001214 GO:0005515
Vifa5g00848 775 SUPERFAMILY SET domain 500 743 IPR046341 -
Vifa5g00848 775 Pfam SET domain 638 741 IPR001214 GO:0005515
Vifa5g00848 775 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 775 IPR025778 GO:0031519
Vifa5g00848 775 ProSiteProfiles CXC domain profile. 507 613 IPR026489 -
Vifa5g00848 775 SMART set_7 627 748 IPR001214 GO:0005515
Vifa5g00848 775 FunFam Putative histone-lysine N-methyltransferase EZH2 528 744 - -
Vifa5g00848 775 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) 24 757 IPR045318 GO:0006338|GO:0042054
Vifa5g00848 775 Gene3D SET domain 528 744 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00848 Vifa-Chr5 248963704 248979001 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00848 616 741 C2H2 Transcription Factor Family AT2G23740 30.070 2.30e-12 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vifa5g00848 SET 5.1e-14 No_clan