Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00843 ATGTCCTTCAATCAATCAAAGTCCGATAACAGTCACCGACGCTCCGCCCGATCCGGAAGCTTTAATCAGCACCCAAGTGACTCCGGCGGTTCTTGCGTTAAGGCCGGCACCGGCGCCGCCGTGCCTTCTCCCGCACTCTCATCTTCCAGGAGTTTTAATAAGAAGTCTAATAATCATACACAAGGTGGACCGCCTAGGGTTAACCCTACCCCGGCAAATGCGAATTCAGTAAACCCTACTCTGGCTAATGTGAACTCAGCCGAGTTAAATTATGCTTCTGTAGTCCGAGCAACACCGAATGGTTCCCATCTACAGCCGCAGTTTCATGGAGGGTCTGATGCATCAGTTGCAAATGCAACTGCCAAGCCATCTGAAACATCAGCTGCCCAGAGGAGCACCAGGGTTGTTCCTAAAGCTCCTCCTATTTCTCAACCTCCCCCCTTGAGTTCTGATTCAGCTGCTCCTACCACTCCTGTTAAGGGAGATGCGTCTAAAGCATTCCCTTTCCAATTTGGATCTATTAGTCCTGGCATTATGAGTGCGATGACTATTCCTGCTCGCACAAGCTCGGCTCCTCCTAATATAGATGAGCAGAAGCGTGATCAGGCTTGTCATGATTCTTCAAGACCCGTGCCTTCTGTGCCGACACCTCCTGTTCCAAAGCAGCTTCCTGTTCCAAAGCCACTGCCAGCTAATAAGGATACAGGTATTGTCGACCAATCTAACGGTGGGGAGACTCATACTGGTTTAAGGGCAAAAAAGGATACTCAGTCTTCACATTTACCTTCACCAAGCTTGATGCATAAGCCTTCTGTTATTCCTATAACTGGGATGTCAATGGCAATGCCATATCACCAGTCACATGCACCTGTACACTTTGGTGTTCCTAATCCACAGATTCAACCTCGTAGTATGTCAACAACATCTCTTCAGATGCCTTTACCAATTGGAAACGCTGCGCAGATGCAACACCAAGTATTCACTCCAAGTCTTCAACCTCATCCTATGCATCCTCAAGGAATCATGCATCAAGGCCAAAGTATGGGTTTCACTCCTCAAATTGGTCATCAAATGGCCCATCAGTTAGGCAACATTGATATGGGCATCAGTTCACAATATTCTCCTCAGCAAGGAGGAAAATTTGCAGCTCCGCCTTCTCGTAAAACTACTCCCGTGAAAATAACCCACCCTGATACTCACGAAGAACTTAGACTTGATAAAAGGGCCAATGCGTATTCAGATGGCGGGTCATCTGGTTCTAGGCCTCGTTCTGTCATCCCTTCTCAATCTCCGTCTGTCCAGTCATTTCCTGCTTCTCATCCTATTAATTACTATCAATCCAATTCTCCCTTTTATCAAACTCCTAGTTCTCTTCCATTACCAAGTAGCCAGATAACTCCCACCACCCAGCCACCAAGAATAAATTATCCAGTGAATCGTGGTCCACAAACTGTTGGTTTCACGAATTCAGTGTCTCATAATTCCCTGCCTGTTAATGAAACTGTCGCTTCTATTTCTGGCATTGTTGAACCACCTAATCAGGAATTTTCCCGTGATGTGCCGAATGTAATCTCATCAACTGTGTTTGGAGCCTCTTATGTGTCTATAAAGCCAAGTGGGTCTGGTGTTGTGATCTCATCATTTTCCGATTCAATTTCTGGTGCTAAAAAAGATGGATCTCCTAGTTCCTTGGTAACATCTAGTGATGCTTGCTCTTCTGTGCCACCAAAAGGGTCTGACACTTGTCCTGAAATCTCTTCCGAACAATCTACTGCTGCATCTTCTGAGAAGCTTACATCAGCTTCCTTGTTGCCTTCTTCATCTGCCTTGAGTAAGAATATGGTTCCAGATGTATCCTTAAACCAGGGCAGAAACAAGGAATCTCTTAGTAGGTCAAATTCTTTGAAGGATAATCAGAAGAAAGAACAGTTGCAGAATCAGGTGGCTGAACAATCTTCTGATGTGGCCAATGATCCTTCCCTAGCTGTTGATGGTGGTACCCCTGATTGTGTAGCTTCTGAAATTGTAGGAACTAAAACAACTCATTCTGCAGCAACTGCCGGTGAAGATTTATCAGCAGCAGCTTCAGGCACATTATCAGCTGCCAGTGAGAGCCGGCCTTCTGTGACTCTTGAGGAAAATACCATTTGTTCTAGACAGGTCTCTGCTTGTGTTTCAGCTGAAGGACCTGTTACTCAAGCTGTTATTAGTTTGAACAATCATAACAGTGCTAAGGTAGATGAATTATCCCAAGAGGATAAGCTGTTAAGACAGACCGTTTCAACTCTTCAGGGAAGAAAAAATGTTAGTGACGGCGGGACAGAATGTAATCAACTCAAACAGGGTGTTACAGAGTTAAGCACTGAGGATGTAACTTTAAAGACTGAACAGCAAGGGCAGGGTGGATCTGCAAGCTACAGCACAGAATGTGACAGGATGTCTAATAATTTAAACACGTCTACCTCTACTGCATTGGATTCTAAAGAAACAACTTCAAAACATTGCAAGGATAGTTCAGAGGATGCTATTGCTGGCAGTGGCTTGGTGTCTCTTCCAGAAGCACCGGGTACTACGAACCAACCAAGTTTAGAGCCAAGTAAAGTGAAAGCTTCATCAAAAGGAAAAAAGAAACGAAAAGAGGTTCTTCTGAAAGCAGACGCTGCTGGGATGACATCTGATCTTTATAACGCATATAAGCAACCCGAGGAAAAGAAAGAGGCTGTTGTCAGTTCGGAGAACACTGGATGTGTTTCTTCTTCTGGAAATTTGAAGCAGTTGCCTGTGGATGCTTCTCAGCCAAATGCAGTTGCAAATGAACAATGCAGGCAGAGTAAGGCTGAGCTTGAGGACTGGGAGAATGTTGCCGACATGTCCACACCAAAATTTGAAGTATCAAATAAAACTCAACTGGTCGGCGACAAAAGTGCAGTTACTGACAAAAAATACTCTCGAGATTTTCTTTTGAAGTTTGCAGAGCACTGGACGGATCTTCCTGAAGGGTTTGAAATCTCGTCAGACATGGAGGCTTTGATGACTTCCAATGTTAGTTCTCATGTTATTGAACGTGGTTCACATCCTTCTGCTGGAAGAAATATAGATAGGTCGAGTGGGATGTCTCGGATGGATCGTCGTGCGAGTGGTGTTATTGAGGACGATAAATGGAGTAAAGGGTCTGGTGTTGTTGGTAGTGGAGGTAATACAGGAATTAGATCTGGCCAAGTAGGCAATTTTGGCAGTTTAAGGAGTCCACGCCCACAGGGAATGCAATATGGGGGAGGGATTCTCTCCGGTCCAATGCAATCCATGGTAAATCAGGGAGGAATGCAAAGAAATAGCCCTGGTGGTGAAAGGTGGCAGCGTAGTGCTAGCTTCCAGCAGAGGGGTTTAATTCCATCTCCTTCTCAATCTCCTATGCAGATGATACACAAAGCTGAGAAGAAGTATGAGGTTGGTAAAGTGACTGATGCGGAACAGGCGAAGCAGAGGCAATTGAAGGGTATATTGAACAAGTTAACTCCACAGAATTTTGAGAAGCTTTTTGAGCAGGTAAAAGCAGTTAATATTGACAACGCAGTCACTCTCACTGGTGTCATCTCACAAATCTTTGAGAAGGCGTTGATGGAACCTACCTTCTGTGAAATGTATGCCAATTTTTGTTTTCATCTGGCAGCTGCATTGCCTGATCTCAGTCAAGACGATGAAAAGATAACATTTAAGAGATTATTGTTAAACAAGTGCCAAGAAGAATTTGAGAGGGGTGAAAGAGAGCAAGAAGAAGCTAATAAAGCTGATGAGGGTGGGGTGAAACAGTCTGATGAGGAAAGAGAAGCAAAACGATCCAAGGCTAGAAGACGAATGTTGGGTAATATCAGGTTAATTGGAGAACTATATAAGAAGAGAATGCTGACAGAGAGGATAATGCACGAGTGCATCAAAAAGTTACTGGGTCAGTGTCAGAATCCCGATGAAGAAGATGTTGAAGCTTTATGCAAATTGATGAGTACTATTGGGGAGATGATTGATCACCCCAAAGCCAAGGAACATATGGATGTATATTTTGAAAGGGTTAAATTATTATCAAACAACATGAGTTTATCTTCTAGGGTGAGGTTCATGTTGAAGGATACCATTGATTTGAGAAAGAATAGATGGCAACAAAGGAGAAAAGTTGAAGGACCAAAGAAGATTGAAGAGGTGCACCGAGATGCTTCCCAAGAGAGGCAATCCCAAGCTGGTAGGCTGGGTCGTGGTATGGGTATTAGTGCAGCAAGAAGGGTCCCTATGGATTTTAGTTCAAGAGGTTCATCTTTGTTGTCCCCTCCTAATGCTCAGATGGGTGGATTGCCTACTCAAGTTCGTGGGTATGGTTCTCAGGATGTTCGTGGGTATGAAAGGCAATCATCGTATCAGGCTAGGACACAGTCTATTCCCTTGCCTCAAAGGCCTTTAGCTGATGAGTCAATAAACTTGGGACCCCAAGGTGGTCTGGCTAGAGGAATGTCCATTAGAGGTCTTCCTACAGTTTCAAGTTCTACTGGTCTTAATGGTTATAGTAATTTACCTGAACAGGCTTCATACAGCTCTAGGGAGGACCACCCTTCGAGATATGTTCCGGATGGATTTTCTGGTCCAACTGCTTATGATCAATCAAGTGTTCCAGAGCAGAATATGAATTATGGTAACAGGGACTTGAGAAATGTAAATAATAGGATTCTTGATAAACCTGTTACAAATCCACCTCCAGCCCGAGCACAAGAGACATTGGGCTCTCAGAATATCTCTTCAGAAAAGGGTTTGTCAGAAGAGCGGCTACTGAACATGTCCATGGCAGCAATTAGAGAATACTATAGTGCTAGAGATTTGAACGAAGTTGTTTTGTGTGTCAAAGATCTGAACTCTCCAAGCTTTCATCCTTCCATGGTTTCTGTATGGGTCACAGACTCATTTGAGAGAAAGGACTTACATCGAGGACTTTTAGCCAAACTGCTGATCGACCTTGTGAAACTTCATGGTAGCACCTTAAGTCAGGCCCAGCTACTTAAAGGGTTTGAATCTGTTTTAAGTACTTTGGAAGAAGTGGTTACAGATGCCCCAAAAGCACCGGAGTTTCTTGGCCGCATTTTTGCTAAAGCTATAACTGAGCAAGTAGTCTCTTTGAAGGAGATTGGGCAGTTAATACACGACGGAGGAGATGAACCACGACGCCTCTTACAAATTGGACTTGCAGCTGATGTTCTTGGCAGCACATTAGAAGTGATACAAGCCGAGAAGGGTGATACCTTTTTGACTGAGCTCCAGACAAGCTCCAACTTGCAATTGCAGACTTACCAGCCACCAGGACCGATTAAATCACGAAAATTAGAAAAATTTATTTAG 5376 0.4405 MSFNQSKSDNSHRRSARSGSFNQHPSDSGGSCVKAGTGAAVPSPALSSSRSFNKKSNNHTQGGPPRVNPTPANANSVNPTLANVNSAELNYASVVRATPNGSHLQPQFHGGSDASVANATAKPSETSAAQRSTRVVPKAPPISQPPPLSSDSAAPTTPVKGDASKAFPFQFGSISPGIMSAMTIPARTSSAPPNIDEQKRDQACHDSSRPVPSVPTPPVPKQLPVPKPLPANKDTGIVDQSNGGETHTGLRAKKDTQSSHLPSPSLMHKPSVIPITGMSMAMPYHQSHAPVHFGVPNPQIQPRSMSTTSLQMPLPIGNAAQMQHQVFTPSLQPHPMHPQGIMHQGQSMGFTPQIGHQMAHQLGNIDMGISSQYSPQQGGKFAAPPSRKTTPVKITHPDTHEELRLDKRANAYSDGGSSGSRPRSVIPSQSPSVQSFPASHPINYYQSNSPFYQTPSSLPLPSSQITPTTQPPRINYPVNRGPQTVGFTNSVSHNSLPVNETVASISGIVEPPNQEFSRDVPNVISSTVFGASYVSIKPSGSGVVISSFSDSISGAKKDGSPSSLVTSSDACSSVPPKGSDTCPEISSEQSTAASSEKLTSASLLPSSSALSKNMVPDVSLNQGRNKESLSRSNSLKDNQKKEQLQNQVAEQSSDVANDPSLAVDGGTPDCVASEIVGTKTTHSAATAGEDLSAAASGTLSAASESRPSVTLEENTICSRQVSACVSAEGPVTQAVISLNNHNSAKVDELSQEDKLLRQTVSTLQGRKNVSDGGTECNQLKQGVTELSTEDVTLKTEQQGQGGSASYSTECDRMSNNLNTSTSTALDSKETTSKHCKDSSEDAIAGSGLVSLPEAPGTTNQPSLEPSKVKASSKGKKKRKEVLLKADAAGMTSDLYNAYKQPEEKKEAVVSSENTGCVSSSGNLKQLPVDASQPNAVANEQCRQSKAELEDWENVADMSTPKFEVSNKTQLVGDKSAVTDKKYSRDFLLKFAEHWTDLPEGFEISSDMEALMTSNVSSHVIERGSHPSAGRNIDRSSGMSRMDRRASGVIEDDKWSKGSGVVGSGGNTGIRSGQVGNFGSLRSPRPQGMQYGGGILSGPMQSMVNQGGMQRNSPGGERWQRSASFQQRGLIPSPSQSPMQMIHKAEKKYEVGKVTDAEQAKQRQLKGILNKLTPQNFEKLFEQVKAVNIDNAVTLTGVISQIFEKALMEPTFCEMYANFCFHLAAALPDLSQDDEKITFKRLLLNKCQEEFERGEREQEEANKADEGGVKQSDEEREAKRSKARRRMLGNIRLIGELYKKRMLTERIMHECIKKLLGQCQNPDEEDVEALCKLMSTIGEMIDHPKAKEHMDVYFERVKLLSNNMSLSSRVRFMLKDTIDLRKNRWQQRRKVEGPKKIEEVHRDASQERQSQAGRLGRGMGISAARRVPMDFSSRGSSLLSPPNAQMGGLPTQVRGYGSQDVRGYERQSSYQARTQSIPLPQRPLADESINLGPQGGLARGMSIRGLPTVSSSTGLNGYSNLPEQASYSSREDHPSRYVPDGFSGPTAYDQSSVPEQNMNYGNRDLRNVNNRILDKPVTNPPPARAQETLGSQNISSEKGLSEERLLNMSMAAIREYYSARDLNEVVLCVKDLNSPSFHPSMVSVWVTDSFERKDLHRGLLAKLLIDLVKLHGSTLSQAQLLKGFESVLSTLEEVVTDAPKAPEFLGRIFAKAITEQVVSLKEIGQLIHDGGDEPRRLLQIGLAADVLGSTLEVIQAEKGDTFLTELQTSSNLQLQTYQPPGPIKSRKLEKFI 1791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00843 1791 Coils Coil 1243 1263 - -
Vifa5g00843 1791 MobiDBLite consensus disorder prediction 1020 1040 - -
Vifa5g00843 1791 MobiDBLite consensus disorder prediction 852 867 - -
Vifa5g00843 1791 MobiDBLite consensus disorder prediction 370 474 - -
Vifa5g00843 1791 FunFam Eukaryotic translation initiation factor 4G 1597 1790 - -
Vifa5g00843 1791 Coils Coil 934 954 - -
Vifa5g00843 1791 MobiDBLite consensus disorder prediction 100 133 - -
Vifa5g00843 1791 MobiDBLite consensus disorder prediction 1507 1527 - -
Vifa5g00843 1791 Gene3D - 1161 1396 - -
Vifa5g00843 1791 MobiDBLite consensus disorder prediction 186 267 - -
Vifa5g00843 1791 SMART if4_15 1161 1383 IPR003890 GO:0003723|GO:0005515
Vifa5g00843 1791 MobiDBLite consensus disorder prediction 1386 1419 - -
Vifa5g00843 1791 Pfam MIF4G domain 1161 1382 IPR003890 GO:0003723|GO:0005515
Vifa5g00843 1791 MobiDBLite consensus disorder prediction 1053 1072 - -
Vifa5g00843 1791 MobiDBLite consensus disorder prediction 100 161 - -
Vifa5g00843 1791 MobiDBLite consensus disorder prediction 1507 1560 - -
Vifa5g00843 1791 ProSiteProfiles MI domain profile. 1603 1727 IPR003891 -
Vifa5g00843 1791 FunFam Eukaryotic translation initiation factor 4G 1161 1396 - -
Vifa5g00843 1791 SMART ma3_7 1604 1718 IPR003891 -
Vifa5g00843 1791 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 372 1790 IPR045208 GO:0003743
Vifa5g00843 1791 Pfam MA3 domain 1611 1716 IPR003891 -
Vifa5g00843 1791 MobiDBLite consensus disorder prediction 790 879 - -
Vifa5g00843 1791 SUPERFAMILY ARM repeat 1156 1385 IPR016024 -
Vifa5g00843 1791 MobiDBLite consensus disorder prediction 42 81 - -
Vifa5g00843 1791 Gene3D - 1595 1791 - -
Vifa5g00843 1791 MobiDBLite consensus disorder prediction 1 81 - -
Vifa5g00843 1791 MobiDBLite consensus disorder prediction 1575 1595 - -
Vifa5g00843 1791 MobiDBLite consensus disorder prediction 1253 1282 - -
Vifa5g00843 1791 MobiDBLite consensus disorder prediction 551 629 - -
Vifa5g00843 1791 MobiDBLite consensus disorder prediction 413 474 - -
Vifa5g00843 1791 MobiDBLite consensus disorder prediction 551 668 - -
Vifa5g00843 1791 MobiDBLite consensus disorder prediction 639 658 - -
Vifa5g00843 1791 MobiDBLite consensus disorder prediction 1386 1407 - -
Vifa5g00843 1791 MobiDBLite consensus disorder prediction 393 409 - -
Vifa5g00843 1791 MobiDBLite consensus disorder prediction 790 828 - -
Vifa5g00843 1791 MobiDBLite consensus disorder prediction 1544 1560 - -
Vifa5g00843 1791 MobiDBLite consensus disorder prediction 211 227 - -
Vifa5g00843 1791 MobiDBLite consensus disorder prediction 1 30 - -
Vifa5g00843 1791 SUPERFAMILY ARM repeat 1597 1786 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00843 Vifa-Chr5 248095359 248102578 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00843 1 1790 Eukaryotic Initiation Factors Gene Family AT3G60240 43.333 0.0 1169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00843 K03260 - gmx:100796636 2210.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g00843 5 248095359 248102578 Vifa5g00843 5 248095359 248102578 ECH
Vifa4g00115 4 13977007 13984743 Vifa5g00843 5 248095359 248102578 PCT