Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00832 ATGGACGAAGACTTCGACATCCCCCAACCCGAGGAAATGAACGAAGATTTCGATCTCCCGGAAGACAAAGTAGGCGAAGAGAGAGAACTCAACGATCGCGGCCTCAAGAAGAAGCTTCTCAAGGAAGGTCAAGGATGGGACACTCCCGAAACCGGAGACGAAGTTCAAGTTCACTATACGGGGACTTTGATTGATGGAACTAAGTTTGATTCGAGTTTCGATAGAGATTCTCCTTTCAGCTTCATGCTTGGACTAGGGCAAGTAATTCAAGGATGGGATGAAGGTATTAAAACCATGAAGAAAGGTGAAATTGCACTCTTCACCATCCCACCCGAGCTAGCTTATGGTGAATCTGGTTCACCTCCCACAATTCCTCCTAATGCGACACTCCTATTTGAAATTGAGCTCTTGTCTTGGACGAGTGTGAAGGACATATCTAAAGATGGCGGTATATTGAAGAGGATACTCAGTGAAGGGGAGAAATGGGAGAACCCCAAGGATCCCGATGAAGCATTGGTTAAGTATAAGGTTCGTCTGGGTGATGGAACGCTTGTAGCAAAGTCTGATGGAGTGGAGTTCACTGTCAGTGAGGGTCATTATTGCCCTGCAATCTCAAAGGCTGTTAAAACCATGAAGAAGGGAGAGAAAGTGATTTTATTAGTAAAGCCTCAATATGGATTTGGTGAGAAGGGGAAACCAGCACACGGTGATGAAGGTGCAGTTCTACCAAATGCATCACTACAGATTACGCTTGAGTTGGTTTCTTGGAAGACTGTTTCAGAAGTGACTAGCGACAAGAAGGTTACAAAGAAGATCCTCAAGGAAGGGGAGGGATATGAGCGTCCAAATGAAGGGGCCATTGTAAAACTGAAACTAGTTGGTAAGCTGCAAGATGGTACTGTCTTTTTCGAAAAGGGCCGTGATGAAGAAGAGAAGCTGTTCGAATTCAAAACAGACGAGGAGCAAGTCGTTGACGGACTTGATAAAGCTGTATTGACTATGAAGAAGGGTGAGGTAGCATTATTGACTATTGCTCCCGAGTATGCATTTGGCGCGTCAGAGTCCCAACAGGAGTCGGTTGTAATTCCTTCTAATTCAACTGTGTATTATGAAGTTGAACTAGTGTCATATGATAAGGAGAAGGAGTCTTGGGATATGAACACTGAAGAGAAAATTGAAGCTGCTGGTAAGAAGAAAGAAGAAGGGAATGCTTTGTTTAAAGCTGGTAAATATGAAAGGGCTTCCAAAAGATACGAGAAGGCTGTGAAGAACATCGAATACGATTCCTCCTTCAGCGAGGAGGAGAAGAAGCTGTCAAAAACGTTGAAGATCGCGTCTTATCTAAACAACGCTGCTTGCAAGTTGAAGTTGAAAGAGTACAAAGATGCAGAGAGATTGTGTACTAAGGTGTTGGACATTGAGAGCACGAACGTGAAAGGCCTCTATAGAAGGGCTCAGGCAAGTATGCAATTGGGTGACTTAGATTTGGCTGAAATTGATGTTAAAAAGGCTCTTGAGGTTGAACCTGACAACAGGGAAGTAAAGCTGGAGTACAGGAATCTGAAGGAAATGGTAAAGGAGTACAATAAAAAGCAGGCGAAATTTTATGGAAATATGTTCAGCTTGACAAAGGCTTGA 1638 0.4359 MDEDFDIPQPEEMNEDFDLPEDKVGEERELNDRGLKKKLLKEGQGWDTPETGDEVQVHYTGTLIDGTKFDSSFDRDSPFSFMLGLGQVIQGWDEGIKTMKKGEIALFTIPPELAYGESGSPPTIPPNATLLFEIELLSWTSVKDISKDGGILKRILSEGEKWENPKDPDEALVKYKVRLGDGTLVAKSDGVEFTVSEGHYCPAISKAVKTMKKGEKVILLVKPQYGFGEKGKPAHGDEGAVLPNASLQITLELVSWKTVSEVTSDKKVTKKILKEGEGYERPNEGAIVKLKLVGKLQDGTVFFEKGRDEEEKLFEFKTDEEQVVDGLDKAVLTMKKGEVALLTIAPEYAFGASESQQESVVIPSNSTVYYEVELVSYDKEKESWDMNTEEKIEAAGKKKEEGNALFKAGKYERASKRYEKAVKNIEYDSSFSEEEKKLSKTLKIASYLNNAACKLKLKEYKDAERLCTKVLDIESTNVKGLYRRAQASMQLGDLDLAEIDVKKALEVEPDNREVKLEYRNLKEMVKEYNKKQAKFYGNMFSLTKA 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00832 545 Pfam Tetratricopeptide repeat 479 511 IPR019734 GO:0005515
Vifa5g00832 545 FunFam Peptidylprolyl isomerase 383 538 - -
Vifa5g00832 545 Coils Coil 511 531 - -
Vifa5g00832 545 MobiDBLite consensus disorder prediction 1 20 - -
Vifa5g00832 545 SUPERFAMILY FKBP-like 261 395 - -
Vifa5g00832 545 Gene3D Tetratricopeptide repeat domain 381 538 IPR011990 GO:0005515
Vifa5g00832 545 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 163 253 IPR001179 GO:0003755
Vifa5g00832 545 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 48 137 IPR001179 GO:0003755
Vifa5g00832 545 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 279 375 IPR001179 GO:0003755
Vifa5g00832 545 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 285 378 IPR001179 GO:0003755
Vifa5g00832 545 ProSiteProfiles TPR repeat profile. 478 511 IPR019734 GO:0005515
Vifa5g00832 545 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 168 257 IPR001179 GO:0003755
Vifa5g00832 545 SUPERFAMILY FKBP-like 19 144 - -
Vifa5g00832 545 Gene3D - 258 378 IPR046357 GO:0003755
Vifa5g00832 545 FunFam Peptidylprolyl isomerase 25 143 - -
Vifa5g00832 545 SUPERFAMILY FKBP-like 144 260 - -
Vifa5g00832 545 FunFam Peptidylprolyl isomerase 258 380 - -
Vifa5g00832 545 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 52 140 IPR001179 GO:0003755
Vifa5g00832 545 Gene3D - 142 257 IPR046357 GO:0003755
Vifa5g00832 545 SUPERFAMILY TPR-like 383 540 IPR011990 GO:0005515
Vifa5g00832 545 SMART tpr_5 478 511 IPR019734 GO:0005515
Vifa5g00832 545 SMART tpr_5 444 477 IPR019734 GO:0005515
Vifa5g00832 545 SMART tpr_5 395 428 IPR019734 GO:0005515
Vifa5g00832 545 Gene3D - 7 141 IPR046357 GO:0003755
Vifa5g00832 545 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 147 260 - -
Vifa5g00832 545 FunFam Peptidylprolyl isomerase 144 257 - -
Vifa5g00832 545 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00832 Vifa-Chr5 246199303 246208258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00832 23 541 Calmodulin-binding Proteins AT3G25230 75.915 0.0 802
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00832 K09571 - gmx:100812632 871.307