Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00829 ATGAGTTACGGCGGTGAAACGTTGGACTTCCGAAACCTTAAGGTGATATCCGCTGTCGGACGTGGTGCAAAAGGCGTTGTGTTTCTTGGGAGAATCTACGGATCGTCGAAAGACGAATGGTTGGCTTTGAAAGTGATATCGAAAGAGCTTCTTCAGAAGAAGAATAGTAACAGAATCGATAAATGCAAAAGGGTCACGTTTGAACAACAAATACTACGTCGTTTTGATCATCCTCTTTTGCCACGGTTAAAAGGGGTTTTTGAAACGGAGAAGCTTATTGGATTTGCTATGGATTATTGTCACGGTGGGAATATGCATTATCTTAAGAAGAAACAACCGGAGAAAAAATTCTCTGAAGAAACCATTAGGTTTTATGCTGTGGAATTGGTGTTAGCATTGGAATATTTACACAATCTAGGAGTAGTTTATAGAGATTTGAAGCTCGAAAACATTATGATTCAACAAAGTGGTCACATAATGCTAGTAGATTTCGACTTATCAAAGAAACTAAATCCAAAATCACCAAACTCACTGAGTTGCAACTCGTCACCAGGTTCAACCTCGCCAGATGTAAAAAACAGAAAGATCAAATGGTTGTCACGGTTTTATTGTCACCGTCCTTCTGGTGGGGAACCGAAATTTGACTCAGTGAGTCAAATTGATCCTAACTCGACATGTAAAAGGAGCGAGTCAGACTCAGTCGAGAAATCCAACTCTTTCGTGGGAACCGAGGATTACGTGGCACCTGAAGTTATAAAGGGGAAAGGTCACAACTTTGCTGTTGATTGGTGGTCATTCGGCGTCGTTTTGTATGAAATGCTTTACGGAACGACGCCGTTTAGTAGTCCTAATAGAAAGGAAACTTTTCAAAAGATTTTAACTATGGAGCCTGAACTAGAGGGTGAAACGACGCCGTTGAAGGATTTGATTGTGAAGTTGCTTGAGAAAGATCCTGACCTTAGGATTCAGATTGATGAAATAAAGGGTCACGATTTCTTTAAAAGTGTGAAGTGGAACAATGTGTTGGGAATTGCTCGTCCACCGTATATTCCTCCTAATGAAATTGTGGACAAAGCTGGATTTTCGAGAAAAGAAGTTGAATCGTTTGTTCATGGAATATTTTTTCCTAAAATTAAAAATGATAATAATGGTGAAAAAGAGAAAATTAAGGAAGAGATTAAAAAAGATGGAAAGGAGAAGGGTGAGAAAGAAGATGACAATGGTAATAAGATTGTCTGGGTTGAGAAATTGAGCCAAAATCATACTAGAGATGATAATTTTTTGTTTTTTTAA 1293 0.3852 MSYGGETLDFRNLKVISAVGRGAKGVVFLGRIYGSSKDEWLALKVISKELLQKKNSNRIDKCKRVTFEQQILRRFDHPLLPRLKGVFETEKLIGFAMDYCHGGNMHYLKKKQPEKKFSEETIRFYAVELVLALEYLHNLGVVYRDLKLENIMIQQSGHIMLVDFDLSKKLNPKSPNSLSCNSSPGSTSPDVKNRKIKWLSRFYCHRPSGGEPKFDSVSQIDPNSTCKRSESDSVEKSNSFVGTEDYVAPEVIKGKGHNFAVDWWSFGVVLYEMLYGTTPFSSPNRKETFQKILTMEPELEGETTPLKDLIVKLLEKDPDLRIQIDEIKGHDFFKSVKWNNVLGIARPPYIPPNEIVDKAGFSRKEVESFVHGIFFPKIKNDNNGEKEKIKEEIKKDGKEKGEKEDDNGNKIVWVEKLSQNHTRDDNFLFF 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00829 430 FunFam Serine/threonine-protein kinase OXI1 235 352 - -
Vifa5g00829 430 Gene3D Phosphorylase Kinase; domain 1 13 103 - -
Vifa5g00829 430 FunFam Serine/threonine-protein kinase OXI1 104 172 - -
Vifa5g00829 430 SMART serkin_6 13 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g00829 430 PANTHER FLIPPASE KINASE 1-RELATED 8 359 - -
Vifa5g00829 430 Gene3D Transferase(Phosphotransferase) domain 1 225 352 - -
Vifa5g00829 430 Gene3D Transferase(Phosphotransferase) domain 1 104 191 - -
Vifa5g00829 430 MobiDBLite consensus disorder prediction 385 405 - -
Vifa5g00829 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672|GO:0006468
Vifa5g00829 430 Pfam Protein kinase domain 233 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g00829 430 Pfam Protein kinase domain 15 177 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g00829 430 SUPERFAMILY Protein kinase-like (PK-like) 12 358 IPR011009 -
Vifa5g00829 430 ProSiteProfiles Protein kinase domain profile. 13 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g00829 430 MobiDBLite consensus disorder prediction 214 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00829 Vifa-Chr5 243958343 243960015 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00829 7 430 AGC Kinase Gene Family AT3G25250 52.315 3.03e-134 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vifa5g00829 Pkinase 7.4e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00829 K20714 - gmx:100813693 536.954