Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00828 ATGGGAGCAGCTCTTCAAACAGGTAAGATGGCCGTTCCTCTGCTAACCAAGAAGATTATCAAGAAGCGTGTCAAGAGGTTCATCAGGCCTCAAAGTGACAGGAGAATATGTGTCAAGGAAAGTTGGCGCAGACCCAAGGGTATTGATTCCCGTGTTAGGAGAAAGTTCAAAGGTGTTACGTTGATGCCCAACATCGGTTACGGTTCCGACAAGAAGACCCGTCACTATCTGCCTAATGGATTCAAGAAGTTTGTTGTCCACAATGTCAAGGATTTAGAACTTTTGATGATGCACAACAGGACTTACTGTGCTGAGATTGCACACAATGTCTCGACAAGGAAGAGAAAGGACATCGTTGAACGTGCAGCACAACTGGATGTTGTTGTCACCAACAAACTTGCCAGACTTCGCAGTCAAGAGGATGAATGA 429 0.4545 MGAALQTGKMAVPLLTKKIIKKRVKRFIRPQSDRRICVKESWRRPKGIDSRVRRKFKGVTLMPNIGYGSDKKTRHYLPNGFKKFVVHNVKDLELLMMHNRTYCAEIAHNVSTRKRKDIVERAAQLDVVVTNKLARLRSQEDE 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00828 142 CDD Ribosomal_L32_L32e 27 131 IPR001515 GO:0003735|GO:0005840|GO:0006412
Vifa5g00828 142 Pfam Ribosomal protein L32 25 131 IPR001515 GO:0003735|GO:0005840|GO:0006412
Vifa5g00828 142 SUPERFAMILY Ribosomal protein L32e 8 140 IPR036351 -
Vifa5g00828 142 PANTHER 60S RIBOSOMAL PROTEIN L32 AND DNA-DIRECTED RNA POLYMERASE II, SUBUNIT N 10 142 IPR001515 GO:0003735|GO:0005840|GO:0006412
Vifa5g00828 142 SMART Ribosomal_L32e_2 24 131 IPR001515 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00828 Vifa-Chr5 243953625 243955821 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00828 10 142 Cytoplasmic Ribosomal Protein Gene Family AT4G18100 89.474 3.20e-89 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00828 K02912 - aof:109837658 244.973