Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00820 ATGGGTCAGCAGGGTCAACAAGGCCAATGTTCTGGCAGACGGCGAGGTGCATGTTCTAATCATCAACTCCCACAGTCATTGCCAATGATGGAGCAACAGATGCTTCCAAGGGGACGTGTCTACCGATACCCTCCTCCTGGTTGCAACCTGCAAGGTATTCCGCTGCCAGGAGTAACGGGAGGAACACCCATTCAGGCTCTGGCTACAGCCCTTGCAAATGCTCCTCCTGAACAGCAGAGGACTATGCTTGGTGAAGTTTTATACCCGCTAGTAGAAAAGATTGAACATGGTGGAGCTGCAAAGGTTACTAGGATGCTTTTGGAAATGGATCAGCCTGAGGTGTTTCATCTGATTGAGTCACCAGACGCTCTAAAGACTTAA 381 0.4987 MGQQGQQGQCSGRRRGACSNHQLPQSLPMMEQQMLPRGRVYRYPPPGCNLQGIPLPGVTGGTPIQALATALANAPPEQQRTMLGEVLYPLVEKIEHGGAAKVTRMLLEMDQPEVFHLIESPDALKT 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00820 126 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 63 126 IPR002004 GO:0003723
Vifa5g00820 126 Pfam Poly-adenylate binding protein, unique domain 71 125 IPR002004 GO:0003723
Vifa5g00820 126 SMART poly_2 75 126 IPR002004 GO:0003723
Vifa5g00820 126 Gene3D - 60 126 - -
Vifa5g00820 126 MobiDBLite consensus disorder prediction 1 29 - -
Vifa5g00820 126 SUPERFAMILY PABC (PABP) domain 27 125 IPR036053 GO:0003723
Vifa5g00820 126 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00820 Vifa-Chr5 240778682 240779062 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00820 1 125 Eukaryotic Initiation Factors Gene Family AT2G23350 52.113 4.59e-32 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00820 K13126 - gmx:100784442 152.14