Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00811 ATGGACGATTACACGAGAGAGATGATGGACCTCAAAACCCTCGTGACTCGCACTCTTGAGAAGAAAGGCGTTCTCGCTAGGATCCGAGCTAAATTAAGAGCTAGTGTCTTTGAAGCTATCGAAGAAGAAGATCGTGTCATCGAAAAGGATCAAGCTCTGCCTCCTGCATTGTTAGGTAGCTGTAACGATCGTGCTAAACAACTTCATGCTTCTCCTTCTGGTAGACTTCTTACTGCACTGGTATGTGAATACCTTGACTGGGCACAACTTACTCACTCGCTAAAAGTTTATCTTCCAGAATGTAATTTGGAGAAAGATTTTTGGAAGTCTGAGTTGAAAGAGTTTAGTAGCAAAAATGGATATGATCTTAATAGAAATGGAGACAGTCCCGTGCTCTTGGATGTGCTTGAAGGATTCTTGAAATTTGAGAACTTATCCCAAGCAAGGGCTAGTGGTAGGAGGTTTACTACTTCAGAAACTGAGCCTTTGCCAAACTCAAAATCACGGAACACGCGAAGGCATTCTTCATCATCTGTTGCTGGTGGCTTACCTCCACTAGGAAGGTGCATAGCTATACTCATTAATCCTGATGATCCATATGGTAGCTGCAAGCCAGATTTTATACAAGGATGTGAAGAAGATGAACTGAGTAAAAGAAAGGATCTCTATGACTTTGAGGTTTTGATTAACACTGATTGGCCTTTCTCAGATTCTGTGCTTCAAAGGCCTTTTACTGAAGAACTGTGTAAAGAAGCTTGCATGGGAGATTGCATGTGTTCTGTGGCTATTTTCAGGTTAGGTGATAGTTGTTGGATGAAGAAGTTACCACTCTCAAATGGGAAAGTTGATCCAACACTTAATGGTGCTAAGGCTTTCTTGAAAGTGAGAAAAGATAATACCTCCCTCCAGTCCTTTGATTTTCCTCCATTTCCAATCATTGCGAACAAGAATAATAATAGGGAAACGTTGGTTTTGGTTGTTTCTGTGCTTTTTGGTAGCTCTGCTATTCTCAATGCTGTATTGCTTGTAGCAATATGTTTCAGCACCTCCATGATTGTTCAGTACAAGAAGAAGCTTAGAAGAGTTAGCAGAAGTGAAACTAGTGTTGAAACCAATTTGCGTTGCTTCACTTACGAAGAGCTTGAAGAAGCTACTAATGGATTTGACAAAGAGCTGGGAAGGGGAGCTTTTGGTATAGTTTATGAAGGAGTCGTCAACAACAACACATGTTCCGAAACTCGTGTGGCTGTGAAAAAGTTGAACAATTTTTTGTTGGATCAAGCTCATAGAGAATTCAGGAATGAACTGAATGTCATTGGTCTCACTCATCATAAGAACTTAGTTCGTTTACTTGGATTTTGTGAGGGTGGAAGTGAAAGATTGCTTGTTTATGAGTACATGAGCAATGGCACTTTGGCAAGTTTACTTTTCAATGCTGATGAGAAACAGAAACCAAGTTGGAAACTAAGGCTTGAACTTGCAATATGA 1488 0.4039 MDDYTREMMDLKTLVTRTLEKKGVLARIRAKLRASVFEAIEEEDRVIEKDQALPPALLGSCNDRAKQLHASPSGRLLTALVCEYLDWAQLTHSLKVYLPECNLEKDFWKSELKEFSSKNGYDLNRNGDSPVLLDVLEGFLKFENLSQARASGRRFTTSETEPLPNSKSRNTRRHSSSSVAGGLPPLGRCIAILINPDDPYGSCKPDFIQGCEEDELSKRKDLYDFEVLINTDWPFSDSVLQRPFTEELCKEACMGDCMCSVAIFRLGDSCWMKKLPLSNGKVDPTLNGAKAFLKVRKDNTSLQSFDFPPFPIIANKNNNRETLVLVVSVLFGSSAILNAVLLVAICFSTSMIVQYKKKLRRVSRSETSVETNLRCFTYEELEEATNGFDKELGRGAFGIVYEGVVNNNTCSETRVAVKKLNNFLLDQAHREFRNELNVIGLTHHKNLVRLLGFCEGGSERLLVYEYMSNGTLASLLFNADEKQKPSWKLRLELAI 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00811 495 MobiDBLite consensus disorder prediction 151 178 - -
Vifa5g00811 495 ProSiteProfiles LIS1 homology (LisH) motif profile. 73 105 IPR006594 GO:0005515
Vifa5g00811 495 Gene3D Phosphorylase Kinase; domain 1 348 466 - -
Vifa5g00811 495 Pfam Protein tyrosine and serine/threonine kinase 388 491 IPR001245 GO:0004672|GO:0006468
Vifa5g00811 495 ProSitePatterns Protein kinases ATP-binding region signature. 392 419 IPR017441 GO:0005524
Vifa5g00811 495 FunFam S-receptor-like serine/threonine-protein kinase 355 466 - -
Vifa5g00811 495 SUPERFAMILY Protein kinase-like (PK-like) 367 493 IPR011009 -
Vifa5g00811 495 MobiDBLite consensus disorder prediction 151 180 - -
Vifa5g00811 495 Gene3D - 59 138 - -
Vifa5g00811 495 Pfam LisH 77 103 IPR006594 GO:0005515
Vifa5g00811 495 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 193 494 - -
Vifa5g00811 495 ProSiteProfiles Protein kinase domain profile. 386 495 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00811 Vifa-Chr5 238723754 238726774 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00811 336 495 Receptor kinase-like Gene Family AT2G23950 41.243 1.09e-26 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vifa5g00811 PK_Tyr_Ser-Thr 3.9e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00811 K16546 - vra:106773297 432.18