Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00796 ATGAGAAACTTGTACTTGATCTTGCTCCACATTTTCCTAACCTTTGTGGTGACACATTCAGCACCTAAAGAATCTGTTATAACAAATCTTCCAGGCTTCAATGGCTCTCTACCTTCAAAGCACTATGGAGGGTATGTGACAATAGATGAAAGTCATGGTAAGAACTTGTATTACTATTTTGTTGAATCAGAAAGTAATTCATCATCAAAGGATCCTATTGTTCTATGGCTTAATGGTGGACCAGGATGTTCTAGTTTTGATGGTTTCGTATTTGAACATGGTCCTTTTAATTTTGAAAAACCTGTCACCAAAGGAGCTTTGCCTAAGTTGAAACTCAATCCATACAGCTGGTCAAAGGTGTCAAACATTATATATTTGGACTCACCAGCTGGAGTAGGATTTTCTTATTCGAAAAATGAATCTGATTATGCAACTGGAGATGAACAAACTGCATTAGACACACATGTTTTTCTCCTTAAATGGTTTGAATTATACCCTGAATTTCTTGCAAATCCATTATTTCTTGCTGGAGAATCTTATGCTGGAGTTTATGTGCCTACTCTTGCTGATAAAATAGTAAAAGGAATTGAAGCTGGTACCAAGCCAAAACTGAATTTCAAGGGTTATTTGATTGGAAATCCTGTTGCTGATGAAATATTTGATGGGAATGCTCTTGTTCCTTTTGCACACGGAATGGGTCTTATCTCTGATCAAATATTTGAGGATACAACAAAAGCATGCAACGGGACTTTCTATATAACAGAATTCGATCCGTGTAGCAATTTAATTTCAAAAGTACACAGTATAATTCACGGCTTAAACAGATATGACATTCTAGAACCATGTTTTTATGGCGATGAGACAGAAGATAATCGAAGAAACAATTCTAAGTTGCCATTAAGCTTTAGGCAATTGGGAAAAACTGAAAAATCTCTTCCAATACGAAAAAGGATGTTCGGTCGTGCTTGGCCCTATGGCGCTATCGTGAAAGACGGAATTGTTCCATCTTGGCCGGAACTTACAAGCAATAGTAACACTGCTCCGCCTTGCACAGACGATGAGATTGCTATGGTATGGTTGAACAATCCTGAAGTGAGAAAAGCTATTCACACCGTGGAGAAAAGTGTAGTTAGAGAATGGGTCTTATGTACAAATCAAGTTATATACAATCATAATCTAGGGAGTATGATCCCTTACCACAAGAATCTTACTTCAAAAGGATACTCAGCATTGATATTTAGTGGTGATCATGACATGTGTGTCCCGTTTACCGGAACGCAAGCATGGACAAGATCACTTGGATATAAGATTGTTGATGAATGGAGACCATGGTTAGTCAATGATCAAGTTGCAGGGTTTACACAAGGATATGCCAACAATCTCAGATTTCTGACGGTAAAGGGGTCTGGACATACTGTTCCAGAATATAAGCCAAAAGAATCATTGTACTTTTACAGACATTTTCTGGAGGGAACTCCTATATAA 1485 0.3771 MRNLYLILLHIFLTFVVTHSAPKESVITNLPGFNGSLPSKHYGGYVTIDESHGKNLYYYFVESESNSSSKDPIVLWLNGGPGCSSFDGFVFEHGPFNFEKPVTKGALPKLKLNPYSWSKVSNIIYLDSPAGVGFSYSKNESDYATGDEQTALDTHVFLLKWFELYPEFLANPLFLAGESYAGVYVPTLADKIVKGIEAGTKPKLNFKGYLIGNPVADEIFDGNALVPFAHGMGLISDQIFEDTTKACNGTFYITEFDPCSNLISKVHSIIHGLNRYDILEPCFYGDETEDNRRNNSKLPLSFRQLGKTEKSLPIRKRMFGRAWPYGAIVKDGIVPSWPELTSNSNTAPPCTDDEIAMVWLNNPEVRKAIHTVEKSVVREWVLCTNQVIYNHNLGSMIPYHKNLTSKGYSALIFSGDHDMCVPFTGTQAWTRSLGYKIVDEWRPWLVNDQVAGFTQGYANNLRFLTVKGSGHTVPEYKPKESLYFYRHFLEGTPI 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00796 494 Gene3D alpha/beta hydrolase 20 294 IPR029058 -
Vifa5g00796 494 FunFam Carboxypeptidase 20 305 - -
Vifa5g00796 494 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 28 478 IPR001563 GO:0004185|GO:0006508
Vifa5g00796 494 FunFam Carboxypeptidase 396 491 - -
Vifa5g00796 494 Pfam Serine carboxypeptidase 31 491 IPR001563 GO:0004185|GO:0006508
Vifa5g00796 494 ProSitePatterns Serine carboxypeptidases, serine active site. 175 182 IPR018202 GO:0004185
Vifa5g00796 494 ProSitePatterns Serine carboxypeptidases, histidine active site. 461 478 IPR033124 GO:0004185
Vifa5g00796 494 FunFam Carboxypeptidase 349 493 - -
Vifa5g00796 494 Gene3D - 347 494 - -
Vifa5g00796 494 PRINTS Carboxypeptidase C serine protease (S10) family signature 161 186 IPR001563 GO:0004185|GO:0006508
Vifa5g00796 494 PRINTS Carboxypeptidase C serine protease (S10) family signature 113 125 IPR001563 GO:0004185|GO:0006508
Vifa5g00796 494 PRINTS Carboxypeptidase C serine protease (S10) family signature 461 474 IPR001563 GO:0004185|GO:0006508
Vifa5g00796 494 PRINTS Carboxypeptidase C serine protease (S10) family signature 126 136 IPR001563 GO:0004185|GO:0006508
Vifa5g00796 494 SUPERFAMILY alpha/beta-Hydrolases 27 493 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00796 Vifa-Chr5 236152752 236155815 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00796 355 494 Calmodulin-binding Proteins AT2G22960 46.429 2.00e-43 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00796 K16296 - gmx:100792057 730.324