Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00795 ATGAGAAACTTGTACTTGATCTTGTTCCACATTTTCCTAACCTTTGTGGTGACACATTCAGCACCTAAAGAATCTGTTATAACAAATCTTCCAGGCTTCAATGGGTCTCTACCTTCAAAGCACTATGGAGGGTATGTGACAATAGATGAAAGTCATGGTAAGAACTTGTATTACTATTTTGTTGAATCAGAAAGTAATTCATCATCAAAGGACCCTATTGTTCTATGGCTTAATGGTGGACCAGGATGTTCTAGTTTTGATGGTTTTGTATATGAACATGGTCCTTTAAATTTTGAAAAACCTGTCACCAAAGGAGCACTGCCTAAGTTGAAACTCAATCCATACAGCTGGTCAAAGGTTTCCAATGTTATATATTTGGACTCTCCAGCTGGAGTGGGATTTTCTTATTCAAAAAATGAATCTGATTATATAACTGGAGATAAAAAAACTGCTGCTGACACACATACTTTTCTCCTTAAATGGTTTGAATTATACCCTGAGTTCCTTGCAAACCCATTATTCCTTGCTGGAGAGTCTTATGCTGGAGTTTATGTGCCTACTCTTGCTGATGAAATAGTAAAAGGAATTGAAGCTGGTACCAAGCCAAAACTGAATTTCAAGGGTTATTTGATTGGAAATCCTGTTGCTGATCCAATATTTGATGGGAACGCTCTTGTTCCTTTTGCACACGGAATGGGTCTTATCTCTGATCAAATATTTGAGGATACAACAAAAGCATGCAACGGGACTTTCTATCCGCCAGATTCCGTTGCGTGCAGCAATATATTGTTAAAAATCGACAATATAATCAATGGCTTAAACATATATGACATATTAGAACCATGTTATCATGGTGATGAGACAGAAGAGAATCAGAAAAGCAAATCTAAGTTGCCATTAAGCTTTAGGCAATTGGGAAAAACTGAAAAATCTCTTGCTGTAAGAAAAAGGATGTTTGGTCGTGCTTGGCCCTATGGAGCTATTGTTGAAGATGGAATTGTTCCATCTTGGCCACATCTTCTTACAAGCAATAGTCACAATGCTCCCCCTTGCTTTGACGATGAGATTGCTATGGTATGGTTGAACAATCCTGAAGTGAGGAAAGCTATTCACGCTGCGGAGAAAAGTGTAGTTAGTGAATGGGAATTATGTACCGGCCAACTTGAATACGATCATGATCTAGGGAGTATGATCCCTTACCACAAGAATCTTACTTCAAAAGGATACTCAGCATTGATATTTAGTGGCGATCATGACATGTGTGTCCCGTATACCGGAACACAAGCATGGACAAGATCACTTGGATATAAGATTGTTGATGAATGGAGACCATGGTTACTCAATGATCAAGTTGCAGGGTTTACACAAGGATATGCCAACAATCTCAGATTTCTGACGGTAAAGGGGTCTGGGCATACTGTTCCAGAATATAAGCCTAAAGAGTCATTGTACTTTTACAAACATTTTCTGGAGGGAACTCCTATATAA 1488 0.3851 MRNLYLILFHIFLTFVVTHSAPKESVITNLPGFNGSLPSKHYGGYVTIDESHGKNLYYYFVESESNSSSKDPIVLWLNGGPGCSSFDGFVYEHGPLNFEKPVTKGALPKLKLNPYSWSKVSNVIYLDSPAGVGFSYSKNESDYITGDKKTAADTHTFLLKWFELYPEFLANPLFLAGESYAGVYVPTLADEIVKGIEAGTKPKLNFKGYLIGNPVADPIFDGNALVPFAHGMGLISDQIFEDTTKACNGTFYPPDSVACSNILLKIDNIINGLNIYDILEPCYHGDETEENQKSKSKLPLSFRQLGKTEKSLAVRKRMFGRAWPYGAIVEDGIVPSWPHLLTSNSHNAPPCFDDEIAMVWLNNPEVRKAIHAAEKSVVSEWELCTGQLEYDHDLGSMIPYHKNLTSKGYSALIFSGDHDMCVPYTGTQAWTRSLGYKIVDEWRPWLLNDQVAGFTQGYANNLRFLTVKGSGHTVPEYKPKESLYFYKHFLEGTPI 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00795 495 Gene3D alpha/beta hydrolase 19 324 IPR029058 -
Vifa5g00795 495 PRINTS Carboxypeptidase C serine protease (S10) family signature 462 475 IPR001563 GO:0004185|GO:0006508
Vifa5g00795 495 PRINTS Carboxypeptidase C serine protease (S10) family signature 161 186 IPR001563 GO:0004185|GO:0006508
Vifa5g00795 495 PRINTS Carboxypeptidase C serine protease (S10) family signature 113 125 IPR001563 GO:0004185|GO:0006508
Vifa5g00795 495 PRINTS Carboxypeptidase C serine protease (S10) family signature 126 136 IPR001563 GO:0004185|GO:0006508
Vifa5g00795 495 Gene3D - 348 495 - -
Vifa5g00795 495 FunFam Carboxypeptidase 350 494 - -
Vifa5g00795 495 ProSitePatterns Serine carboxypeptidases, histidine active site. 462 479 IPR033124 GO:0004185
Vifa5g00795 495 FunFam Carboxypeptidase 397 492 - -
Vifa5g00795 495 SUPERFAMILY alpha/beta-Hydrolases 27 494 IPR029058 -
Vifa5g00795 495 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 28 479 IPR001563 GO:0004185|GO:0006508
Vifa5g00795 495 FunFam Carboxypeptidase 20 305 - -
Vifa5g00795 495 Pfam Serine carboxypeptidase 31 492 IPR001563 GO:0004185|GO:0006508
Vifa5g00795 495 ProSitePatterns Serine carboxypeptidases, serine active site. 175 182 IPR018202 GO:0004185
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00795 Vifa-Chr5 236142543 236145141 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00795 356 495 Calmodulin-binding Proteins AT2G22960 47.143 3.18e-43 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00795 K16296 - gmx:100792057 750.355