Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00787 ATGGGTGGTGTGGATCAGAAAAAGGAAAAGAAGAATAACATGAATGGTTCAATATGGTCCATTTTCATGCATGCTGATACACAAGATTGGTTCCTTATGATTTTAGGCACCATTGGAGCTATTGGTGAAGGTTGTATTACTCCTTTGGTTTTGCTTATTAGTAGCCAAATGATGAATAATTATGGGACTTCATCTACCACTAATGGAAACACTTTCATCCATAATATCAATAAGAACGCACTGGCTTGGTTCTATTTGGCTTGTGCATCTTTTTTTGTTTGTTTCTTTGAGGGTTATTGTTGGACAAGAACAAGTGGAAGGCAAGCTACAAAAATGAGATGCAGATATTTGAAAGCAGTTCTTAGACAAGATGTTGCTTACTTTGATTTACAGGTCACAAGTACTTCCGAGATTATCACTAGCGTCTCCAACGACACTCTTTTAATTCAAGATGTTATCAGTGAAAAGGTTCCAAATTTTTTGATGAACATTTCATCATTCATGGCAAGCTACATAATGCCTTTTATATTGCTATGGAGATTGGCAATAGTAGCATTTCCATTTAGTTTTCTTCTAGTGATCCCTGGATTAATATATGGCAAGACTTTGATGAGTTTATCAAGAAAGATCAGAGAAGAGTATAATCAAGGTGGTACAGTTGCGGAACAAACATTATCTTCTATCAGAACTGTTTATTCTTTTGTAGGGGAACAAAAATCCATGAATGCTTTCTCTAAAGCTCTGGAAGGTACTGTGGAGTTGGGTTTAAAACAAGGATTAGCGAAAGGTTTGGCCATTGGAAGCAATGGTTTTGTGTTTGCCATTTGGGCTTTCTTGTGCTATTATGGTAGCAAAATGGTTATGTACCACGGTGCTCAAGGAGGGACTGTTTTTGCAGTCGGAGCAAGCATAACGGTTGGTGGATTAGCATTAGGTGCTAGTTTATCCAACGTGAAGTATTTCTCTGAAGCAATTACGGCCGGTGAAAGAATCAAGAGAGTAATAGAAAGAGTTCCCAAGATCGATTCTATCAGCGCAAACGGAGAAGTATTGGAAAATGTTTCCGGGGAAGTGGAATTTGACAATGTAGAATTTTCATACCCGACAAGACCAGAAACCATTATCCTTAAGAAGTTTTGTCTCAAGATTCCAGCAGGAAAAACAGTTGCGTTGGTCGGTGAAAGTGGTTCAGGGAAATCAACAGTAGTGTCATTGTTGCAACGATTTTATGATCCGATTGGTGGAGAGATTCGTCTCGATGGAGTTGCTATTCATAAGTTAAAGATAAAATGGCTTAGATCAGTGATGGGGTTGGTTAGTCAAGAACCTGCTTTGTTTGCAACAAGCATTAAAGAGAATATAATGTTTGGTAAAGAAGATGCTACTGAGGATGAGATTGTTGAAGCTGCTAAAATTTGTAATGCTCATGATTTCATTTCTTTGCTTCCTTCTGGTTACAATACTCAGGTTGGAGAAAGAGGGGTTCAATTATCGGGTGGACAAAAACAAAGAATAGCAATTGCAAGAGCAATTATTAAGAAACCACGAATCCTTCTTTTAGACGAAGCAACTAGCGCATTAGATACTGAGTCAGAATGGCTCGTTCAACAAGCACTCGACAAAGCAACAGCAGGTTGCACCGCCATCATCATCGCTCATCGTCTCTCCACAATAAAAAACGCAGACATTGTTGCTGTCGTGCACGCTGGAAAAGTTACCGAGATTGGCTCACATGACGAACTTCTACAAAACGATAACAACCTCTACGCATCCCTGGTCCGCCTTCAACAAACCAAAACAGAATCAGAAGAAACGGTTACAACTACCTTCACAAACACGCAAACTGTGGTGGAACCTACCAATTTAGTTGAAGATAAAATCAATAATGATAGTGTTAATAAGAGTGATAAAGATACTGATAAAACCGTGTCGTTTTGGAGATTACTTGCACTGAATGCTCCAGAATGGAAGCAAGCGGTTTTGGGGTGTTTGAACGCAATGGTGTTTGGCGCGGTTCAACCTACTTTTGCATTTACATTAGGATCAATGATATCTGTGTTTTTTTATACTGATCACGAGGAAATAAAAAACAAGACCAAGGTTTATTCACTTGTGTTTTTCGGTTTCTCATTGATAACTTTGGTGGTTAATATTGGACAACACTATAACTTTGCTTACATGGGAGAGTACTTGACTAAACGTGTAAGAGAGAGCATGCTTTCTAAGATTCTCACTTTTGAAGTTGGATGGTTTGATCAAGATGAAAATTCTAGTGGTGCTATTTCTTCTCGACTTGCCAATGATGCTAATGTGGTGAGGTCAATAGTTGGTGATAGAATGGCTTTGTTGGTACAAACATTTTCAGCAGTAGCAACAGCTTACACTATGGGATTAATCATTTCATGGAGGCTCACACTTGTTACCATAGCTATTCAACCAATTTTAGTAGCTTGTTTTTACACAAAAGGTGTTTTGCTCAAAAGCCTTTCAAGCAAGTCTATTAAGGCCCAACAACAAAGTAGTAAGTTAGCTTCTGAGGCAGTTTCAAATCTTAGAACCATTACTGCTTTTTCATCTCAAGATAGAATACTCAAAATGCTTGAAGAGGCCCAACAAGGCCCTATTCAAGAGAATTTTCGACAAGCGTGGTTTGCTGGTCTTGGGCTTGGGTTTTCACAATTCCTCATGTCTTGTTCTTGGGCCTTAAATTATTGGTATGGCGGAAAGCTTTTGGCGGAAGGGAAGATAACGAAGAAAGCTTTGTTTGAGTGTTTTATGGTTGTGATAAGTACGGGACGAGTTATAGGTGACGCTGGAAGCATGACTAAAGATATTTCCAAAGGTACAGATACCGTGAGCTCGATCTTCGCCATCCTAGATCGGGCCACCAAGATCGAATCAGACGATCCTGATAGATTTAAGCCCGTTACTTTAACAGGACATATAGAATTTTGCGAAGTGCATTTTGCATACCCCGCTAGGCCTAATGTGATAATATTTCATGGTTTTTCAATTAAAATTGAAGCGGGAAAATCAACAGCATTAGTAGGTCAAAGTGGTTCGGGAAAGTCGACGATCATAGGATTAATAGAGAGATTCTATGATCCACTAAAAGGAAGTGTGACAATAGATGGTATGAACATAAAATCATATAACCTAAAGTCACTAAGAAAACACATAGCACTTGTGAGCCAAGAGCCAACATTGATTAATGGAACCATAAGGGACAACATTGCATATGGAACAACATGTGAGAAAATTAATGAAGCTGAGATCATAGATGCAGCAAGAGTAGCCAATGCTCATGATTTCATAGCTAGTTTGAGAGATGGGTATGAAACATGGTGTGGAGACAAAGGGGTGCAACTTTCAGGGGGTCAAAAACAAAGGATAGCAATAGCTAGAGCTATGTTAAAGAATCCAAAAGTGTTGCTACTAGATGAGGCAACAAGTGCACTAGATAACAATTCAGAGAAAGTGGTGCAAGAAGCATTGGATAAGGTAATGGTGGGAAGAACAAGTGTGGTTGTGGCACATAGGTTGAGTACAATACAAAATTGTGATGTTATTGCTGTTTTAGATAAAGGGAAAATGGTTGAGATTGGAACTCATAAAACTTTGTTGGCTAATGGACCTTCTGGTGCTTATTACTCTTTGGTAAAGCTTCAAACTAAACATCCAGTCTCAACTAATTAA 3696 0.3877 MGGVDQKKEKKNNMNGSIWSIFMHADTQDWFLMILGTIGAIGEGCITPLVLLISSQMMNNYGTSSTTNGNTFIHNINKNALAWFYLACASFFVCFFEGYCWTRTSGRQATKMRCRYLKAVLRQDVAYFDLQVTSTSEIITSVSNDTLLIQDVISEKVPNFLMNISSFMASYIMPFILLWRLAIVAFPFSFLLVIPGLIYGKTLMSLSRKIREEYNQGGTVAEQTLSSIRTVYSFVGEQKSMNAFSKALEGTVELGLKQGLAKGLAIGSNGFVFAIWAFLCYYGSKMVMYHGAQGGTVFAVGASITVGGLALGASLSNVKYFSEAITAGERIKRVIERVPKIDSISANGEVLENVSGEVEFDNVEFSYPTRPETIILKKFCLKIPAGKTVALVGESGSGKSTVVSLLQRFYDPIGGEIRLDGVAIHKLKIKWLRSVMGLVSQEPALFATSIKENIMFGKEDATEDEIVEAAKICNAHDFISLLPSGYNTQVGERGVQLSGGQKQRIAIARAIIKKPRILLLDEATSALDTESEWLVQQALDKATAGCTAIIIAHRLSTIKNADIVAVVHAGKVTEIGSHDELLQNDNNLYASLVRLQQTKTESEETVTTTFTNTQTVVEPTNLVEDKINNDSVNKSDKDTDKTVSFWRLLALNAPEWKQAVLGCLNAMVFGAVQPTFAFTLGSMISVFFYTDHEEIKNKTKVYSLVFFGFSLITLVVNIGQHYNFAYMGEYLTKRVRESMLSKILTFEVGWFDQDENSSGAISSRLANDANVVRSIVGDRMALLVQTFSAVATAYTMGLIISWRLTLVTIAIQPILVACFYTKGVLLKSLSSKSIKAQQQSSKLASEAVSNLRTITAFSSQDRILKMLEEAQQGPIQENFRQAWFAGLGLGFSQFLMSCSWALNYWYGGKLLAEGKITKKALFECFMVVISTGRVIGDAGSMTKDISKGTDTVSSIFAILDRATKIESDDPDRFKPVTLTGHIEFCEVHFAYPARPNVIIFHGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGSVTIDGMNIKSYNLKSLRKHIALVSQEPTLINGTIRDNIAYGTTCEKINEAEIIDAARVANAHDFIASLRDGYETWCGDKGVQLSGGQKQRIAIARAMLKNPKVLLLDEATSALDNNSEKVVQEALDKVMVGRTSVVVAHRLSTIQNCDVIAVLDKGKMVEIGTHKTLLANGPSGAYYSLVKLQTKHPVSTN 1231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00787 1231 Gene3D - 348 597 IPR027417 -
Vifa5g00787 1231 SMART AAA_5 385 579 IPR003593 GO:0016887
Vifa5g00787 1231 SMART AAA_5 1009 1196 IPR003593 GO:0016887
Vifa5g00787 1231 FunFam ABC transporter B family member 1 20 357 - -
Vifa5g00787 1231 Pfam ABC transporter 376 525 IPR003439 GO:0005524
Vifa5g00787 1231 FunFam ABC transporter B family member 4 348 604 - -
Vifa5g00787 1231 SUPERFAMILY ABC transporter transmembrane region 25 339 IPR036640 GO:0005524|GO:0016020
Vifa5g00787 1231 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 971 1223 IPR027417 -
Vifa5g00787 1231 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 982 1220 IPR003439 GO:0005524
Vifa5g00787 1231 CDD ABC_MTABC3_MDL1_MDL2 358 596 - -
Vifa5g00787 1231 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 34 323 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa5g00787 1231 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 666 947 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa5g00787 1231 SUPERFAMILY ABC transporter transmembrane region 640 968 IPR036640 GO:0005524|GO:0016020
Vifa5g00787 1231 ProSitePatterns ABC transporters family signature. 1123 1137 IPR017871 GO:0005524|GO:0016887
Vifa5g00787 1231 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 358 594 IPR003439 GO:0005524
Vifa5g00787 1231 FunFam Putative ABC transporter B family member 8 624 970 - -
Vifa5g00787 1231 Gene3D - 972 1229 IPR027417 -
Vifa5g00787 1231 PANTHER ABC TRANSPORTER B FAMILY 6 673 IPR039421 -
Vifa5g00787 1231 CDD ABC_MTABC3_MDL1_MDL2 982 1223 - -
Vifa5g00787 1231 ProSitePatterns ABC transporters family signature. 497 511 IPR017871 GO:0005524|GO:0016887
Vifa5g00787 1231 Pfam ABC transporter transmembrane region 662 930 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa5g00787 1231 Pfam ABC transporter transmembrane region 33 305 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa5g00787 1231 Pfam ABC transporter 1001 1151 IPR003439 GO:0005524
Vifa5g00787 1231 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 349 596 IPR027417 -
Vifa5g00787 1231 Gene3D ABC transporter type 1, transmembrane domain 20 948 IPR036640 GO:0005524|GO:0016020
Vifa5g00787 1231 FunFam ABC transporter B family member 4 973 1228 - -
Vifa5g00787 1231 CDD ABC_6TM_Pgp_ABCB1_D1_like 33 331 - -
Vifa5g00787 1231 CDD ABC_6TM_Pgp_ABCB1_D2_like 649 965 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00787 Vifa-Chr5 234283119 234287591 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00787 5 616 Calmodulin-binding Proteins AT2G36910 34.304 2.24e-101 349
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00787 K05658 - gmx:100791575 1716.82