Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00786 ATGGCTATCCAAGAAACTTTGTTAGACAAGCCAAGAAAATCGATTCCAAAAACATTTTGGTTAATCCTCTCTTTAGCTGCTATCATAAGCTCATCAGCCCTTATTGCTACTCATCTCAAGAAACCAACCTCCTTCTTCCACTTCTCTTCTGCTCCAAATCTGTGTGAGCATGCTCTTGATACAGAAGCATGCTTAACTCATGTATCTGAAGTTGTTCAAGGCCCAACCTTGGCTAACACAAAAGACCTCAAATTGAGTACACTCATATCATTATTAACTAAGTCTACCACACACATTCAAAATGCTAAGGACACGGTCGACGTTATTAAGCGCCGAATTAACGGTCCTAGAGAGCAGACAGCTTTGAATGACTGTGAGCAACTAATGGACATGTCCATGGATAGAGTTTGGGACTCAGTGTTGGCTCTAACTAAAAATAACATTGATTCACAACAAGATGCACACACATGGCTAAGTAGTGTGCTCACTAACCATGCAACATGTTTGGATGGTTTAGAAGGCACATCTCTGATCGTTATGGAAAGTGACATCCAAGAGTTGAAATCTAGAGCTAAAACTTCTCTAGCTGTGTTCCTTGCTGTTTTTCCTCAAAAGGGTCATGGCCAATTTGTTGATGAAACATTGAATGGCGAATTTCCATCGTGGGTTACAAGCAAGGATAGGAGGCTTTTGGAGTCCTCAGTTGGGGACATAAAGGCGAATGTTGTGGTGGCCCCTGATGGAAGTGGGAAGTTCAAAACTGTGGCTGAGGCTGTGGCATCTGCACCTGACAATGGTAAGACAACATATGTTATCTATGTGAAAAAGGGAACATACAAAGAGAATATAGAAATTGGTGCTAAGAAAACAAATGTGATGCTCGTTGGTGATGGTATGGATGCAACAATAATCACAGGCAGCTTGAATTTCATCGATGGAACAACCACCTTCAAAAGTGCTACTGTTGCTGCAGTTGGGGATTCGTTTATAGCACAAGACATTTGGTTCCAAAACACGGCAGGCGCAGAGAAGCACCAAGCAGTGGCTCTCCGTGTCGGGGCCGACAGATCTGTCATCAACCGATGCCGCATTGACGCCTATCAAGACACTCTTTATGCACACTCCAACAGGCAATTTTACCGCGAGTCAGTCATCACAGGTACAGTCGATTTCATCTTTGGAAATGCGGCTGTTGTGTTCCAGAAGTGCAAGTTAGTGGCCCGGAAGCCCATGAGCAACCAAAACAACATGTTCACAGCCCAAGGTCGAGAAGACCCCGGTCAGAACACAGGAACTTCTATCCAACAATGTGACCTAACACCAAGCTCGGACCTTAAGCCAGTTGTGGGATCAATCAAAACATTCCTTGGCCGCCCATGGAAGAAATTCTCTCGAACTGTTGTGCTGCAATCCTTTCTCGACAGCCACATTGACCCGACAGGATGGGCCGAATGGGATGCCGCGAGTAAGGACTTTTTGCAAACGTTGTACTATGGAGAGTACATGAACAATGGACCAGGTGCAGGTACGAGCAAGAGAGTAAATTGGCCTGGTTATCATGTCATCACAAGTGCGGCCGAAGCTAGCAAGTTTACCGTAGCACAACTGATTCAAGGTAATGTTTGGTTGAAGAACTCAGGGGTGGCCTTTACTGAGGGCTTGTAA 1665 0.4486 MAIQETLLDKPRKSIPKTFWLILSLAAIISSSALIATHLKKPTSFFHFSSAPNLCEHALDTEACLTHVSEVVQGPTLANTKDLKLSTLISLLTKSTTHIQNAKDTVDVIKRRINGPREQTALNDCEQLMDMSMDRVWDSVLALTKNNIDSQQDAHTWLSSVLTNHATCLDGLEGTSLIVMESDIQELKSRAKTSLAVFLAVFPQKGHGQFVDETLNGEFPSWVTSKDRRLLESSVGDIKANVVVAPDGSGKFKTVAEAVASAPDNGKTTYVIYVKKGTYKENIEIGAKKTNVMLVGDGMDATIITGSLNFIDGTTTFKSATVAAVGDSFIAQDIWFQNTAGAEKHQAVALRVGADRSVINRCRIDAYQDTLYAHSNRQFYRESVITGTVDFIFGNAAVVFQKCKLVARKPMSNQNNMFTAQGREDPGQNTGTSIQQCDLTPSSDLKPVVGSIKTFLGRPWKKFSRTVVLQSFLDSHIDPTGWAEWDAASKDFLQTLYYGEYMNNGPGAGTSKRVNWPGYHVITSAAEASKFTVAQLIQGNVWLKNSGVAFTEGL 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00786 554 CDD PMEI-like_4 57 201 - -
Vifa5g00786 554 Pfam Pectinesterase 241 540 IPR000070 GO:0030599|GO:0042545
Vifa5g00786 554 ProSitePatterns Pectinesterase signature 1. 266 285 IPR018040 -
Vifa5g00786 554 Gene3D Invertase/pectin methylesterase inhibitor family protein 52 202 IPR035513 -
Vifa5g00786 554 SUPERFAMILY Pectin lyase-like 239 553 IPR011050 -
Vifa5g00786 554 Gene3D - 235 554 IPR012334 -
Vifa5g00786 554 NCBIfam pectinesterase inhibitor domain 23 198 IPR006501 GO:0004857
Vifa5g00786 554 ProSitePatterns Pectinesterase signature 2. 385 394 IPR033131 -
Vifa5g00786 554 Pfam Plant invertase/pectin methylesterase inhibitor 53 189 IPR006501 GO:0004857
Vifa5g00786 554 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 53 178 IPR035513 -
Vifa5g00786 554 PANTHER PECTINESTERASE 28 544 - -
Vifa5g00786 554 SMART PMEI_2 47 197 IPR006501 GO:0004857
Vifa5g00786 554 FunFam Pectinesterase 235 554 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00786 Vifa-Chr5 234270031 234271999 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00786 5 554 Carbohydrate Esterase AT1G11580 54.902 0.0 595
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00786 K01051 - gmx:100815836 845.499