Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00784 ATGGCTACCCAAGAAACTTTGCTAGACAAGCCAAGAAAATCGATTCCAAAAACATTTTGGTTAATCCTCTCTTTAGCTGCTATAATAAGCTCATCAGCCCTTATTGTTTCTTATCTCAACAAACCAACTTCCTTCTTCCACCTCTCATCCGCTCCCAATCTGTGTGAGCATGCTCTTGATATAGAAGCATGCTTAACTCATGTATCTGAAGTTGTTCAAGGCCCAACCTTGGCTACCACAAAAGACCACAAATTGAGTACACTCATATCCTTATTAACCAAGTCCACCACACACATTCAAGAAGCCATGAACAGAGCCAATGTTATAAAACGCCGAGTTAACGGTCCTAGAGAGGAGGCAGCCTTGAATGACTGTGAAGAACTTATGAACTTGTCCATGGAAAGAGTTTGGGACTCAGTGTTGACTCTAACAAAAGATAACACGGACTCGCAACAAGATGCACACACATGGCTGAGTAGTGTGCTCACTAACCATGCAACTTGCTTGGATGGTTTAGAGGGTACATCTCGGGTCGTGATGGAAAGTGACCTTCAGGACTTAATATCAAGAGCTAGATCTTCTCTGGCCGTGCTTGTTTCCGTTTTACCCGAAAAGAATAACTACGCATTCATTGATGAATCATTGAACGGTGAGTTTCCCTCATGGGTAACAAGTAACGATCGAAGGCTTTTGGAGTCTTCGGTTGGGGACATAAATGCCAATGTTGTGGTGGCTAAAGATGGTAGCGGTAAGTTCAAAACTGTGGCTGAGGCCGTGGCGTCGGCACCTAACAAAGGTAAGACTAGGTATGTTATCTATGTGAAAAAGGGAACCTACAAAGAGAATGTTGAAATCAGTAGTCAGAAGACGAATGTGATGCTCCTCGGTGACGGTATGGATGCAACAATTATCACAGGCAGCTTGAATTTTGTTGACGGAACAGGCACCTTCCAAACTGCAACTGTCGGCCCAGAGAAGCACCAGGCGGTTGCTCTCCGCGTCGGTTCTGATCAATCCGTCATCAACCGCTGTCGCATTGACGCATTTCAAGACACTCTCTACGCACACTCCAACCGACAGTTTTACCGCGATTGTTTCATTACCGGTACTATTGATTTTATCTTCGGAAATGCAGCTGCTGTGTTCCAAAAGAGCAAACTCGTGGCCCGGAAGCCCATGAGTAACCAAAAAAACATGGTCACAGCCCAAGGTCGAACAGACCCAAACCAGAACACTGCAACTTCAATTCAGCAGTGTGACATAATACCAAGCACGGATCTCAAACCTGTCCTAGCCTCCATCAAAACATACCTAGGCCGACCATGGAAAGCCTACTCCAGAACAGTTGTGCTGCAGTCCCCGATAGGCAACCACATTGACCCAGCAGGATGGGCTGAATGGGATGACGCGAGTAAGGCCTTTCTCAAAACATTGTATTACGGAGAGTACCAGAACAGTGGACCGGGTGCCGGTACCGCCAAAAGAGTGAACTGGCCTGGTTATCATATCCTAAATACCGCAGAGGCAAATAAGTTTACAGTAACACAGCTCATCCAAGGTAATGTTTGGTTGAAGAGCACAGGGGTGGCCTTCATCGCAGGCCTGTAG 1608 0.4614 MATQETLLDKPRKSIPKTFWLILSLAAIISSSALIVSYLNKPTSFFHLSSAPNLCEHALDIEACLTHVSEVVQGPTLATTKDHKLSTLISLLTKSTTHIQEAMNRANVIKRRVNGPREEAALNDCEELMNLSMERVWDSVLTLTKDNTDSQQDAHTWLSSVLTNHATCLDGLEGTSRVVMESDLQDLISRARSSLAVLVSVLPEKNNYAFIDESLNGEFPSWVTSNDRRLLESSVGDINANVVVAKDGSGKFKTVAEAVASAPNKGKTRYVIYVKKGTYKENVEISSQKTNVMLLGDGMDATIITGSLNFVDGTGTFQTATVGPEKHQAVALRVGSDQSVINRCRIDAFQDTLYAHSNRQFYRDCFITGTIDFIFGNAAAVFQKSKLVARKPMSNQKNMVTAQGRTDPNQNTATSIQQCDIIPSTDLKPVLASIKTYLGRPWKAYSRTVVLQSPIGNHIDPAGWAEWDDASKAFLKTLYYGEYQNSGPGAGTAKRVNWPGYHILNTAEANKFTVTQLIQGNVWLKSTGVAFIAGL 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00784 535 CDD PMEI-like_4 57 201 - -
Vifa5g00784 535 Pfam Plant invertase/pectin methylesterase inhibitor 53 193 IPR006501 GO:0004857
Vifa5g00784 535 ProSitePatterns Pectinesterase signature 1. 266 285 IPR018040 -
Vifa5g00784 535 Gene3D Invertase/pectin methylesterase inhibitor family protein 52 202 IPR035513 -
Vifa5g00784 535 SMART PMEI_2 46 197 IPR006501 GO:0004857
Vifa5g00784 535 NCBIfam pectinesterase inhibitor domain 27 181 IPR006501 GO:0004857
Vifa5g00784 535 SUPERFAMILY Pectin lyase-like 239 534 IPR011050 -
Vifa5g00784 535 Pfam Pectinesterase 241 521 IPR000070 GO:0030599|GO:0042545
Vifa5g00784 535 PANTHER PECTINESTERASE 32 525 - -
Vifa5g00784 535 ProSitePatterns Pectinesterase signature 2. 367 376 IPR033131 -
Vifa5g00784 535 FunFam Pectinesterase 235 535 - -
Vifa5g00784 535 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 53 178 IPR035513 -
Vifa5g00784 535 Gene3D - 238 535 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00784 Vifa-Chr5 233507763 233509513 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00784 3 531 Carbohydrate Esterase AT1G11580 51.075 0.0 545
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00784 K01051 - gmx:100815836 773.852