Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00782 ATGTCAGAAGAAGTTGTTTCTCATGCCCTTGAAACCATTATTGAAGAAGAACATGTTGCACCAAAAGTTGAAAAAGTTAATGACACAGATACATCTAGCCATTATGGTCTAGATTCAGGATTCTACATGTCATCTTTTACAGCAACAATTTTCGTTGTTTCCCTTGTCACTCTTGGAGTTTTACTTATTACTTTGCTGGTTTCTTTGGTGATTATGCTGCAATCATGTCAAAGTAAAAGTACTGGAGTTATTGAACTTGTGAATATGAATAATTACTACAGTTATTGCAGGGTGTATTCTCTGCATGCTGAGATCAATAGGTTAGAGAGATATGATCTTCCAAACATATGTAGAGATCTGACTATACATTATATCAAAGGAGGGCATTATGCCAAAGAGTTGAATTTAATTGTGTCTATGATCGATGATTACTTCAAGAATCTGAGACCTTCAGACAATGGTTTGGATGTGGTGTTGTTGGATATAGATGATATTGTTCCTCCAAATTCGTATCAGAGGTTTCATAGGGACGGCATTAGCAACTGTGTCAAAGAGGCAAAACATGTAAAGCTCATGTTTGTTTTAAGATTATACATGAACCTTCAAACTGATGGGTGGCCTATAATTTTGGTATCAAGAGAACCTGAAACGTACCAAAATGTCACCATTAATCATCTTGTTTCTGCAGGATTTAGAGGTTGGTCTTCCTTGATGATGAGAACAGAAGATTCAGAGTCTACTAAAGGAAATGAGTACTTTTCTAGACGTCTGCTTTCGTATCCATCAGGTCATTTCTTCCCTGCAGCTGATCAGGTCGGGCAAGTTAAGTGTGGGAGTTGTACGCTATTGCTAATGTATCCATATGGCGCTTCACAGGTCAGGTGTTCATCATGCCGGTTTGTGACAGAAATCGGGGCAATCAAAGACACTATTAAGAAGATGTTTAAGGACAATTACCTCAACTTATACACAACTGATGTGGATACTACAGGTTGGATACACACCAAGTGTGGCTTTCCAAGCATGGAAGAAAGCATATTAGATCAGTTGAATGAAGAGTTGAAAGAGAAAATAAAGAATGATGTTTATGACATGGCTCCTTGGAAATCTCCAAGTCCAGATGGATACCGTGTAGGCTTTTATCAAAACTCTTGA 1155 0.3784 MSEEVVSHALETIIEEEHVAPKVEKVNDTDTSSHYGLDSGFYMSSFTATIFVVSLVTLGVLLITLLVSLVIMLQSCQSKSTGVIELVNMNNYYSYCRVYSLHAEINRLERYDLPNICRDLTIHYIKGGHYAKELNLIVSMIDDYFKNLRPSDNGLDVVLLDIDDIVPPNSYQRFHRDGISNCVKEAKHVKLMFVLRLYMNLQTDGWPIILVSREPETYQNVTINHLVSAGFRGWSSLMMRTEDSESTKGNEYFSRRLLSYPSGHFFPAADQVGQVKCGSCTLLLMYPYGASQVRCSSCRFVTEIGAIKDTIKKMFKDNYLNLYTTDVDTTGWIHTKCGFPSMEESILDQLNEELKEKIKNDVYDMAPWKSPSPDGYRVGFYQNS 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00782 384 PANTHER ACID PHOSPHATASE-LIKE PROTEIN 59 255 - -
Vifa5g00782 384 Pfam HAD superfamily, subfamily IIIB (Acid phosphatase) 88 247 IPR005519 -
Vifa5g00782 384 Pfam LSD1 zinc finger 277 301 IPR005735 -
Vifa5g00782 384 NCBIfam zinc finger domain, LSD1 subclass 274 302 IPR005735 -
Vifa5g00782 384 Gene3D - 91 259 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00782 Vifa-Chr5 232533465 232536261 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Vifa5g00782 Acid_phosphat_B 2.2e-11 CL0137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00782 - - gmx:100798657 317.775