Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00781 ATGGTTTGTGGTTCTTGTAGACGTCTGCTTTCGTATCCATCAGGTCATTTCTTCCCTGCAGCTGATCAGGTCGGGCAAGTTAAGTGTGGGAGTTGTACGCTATTGCTAATGTATCCATATGGCGCTTCACAGGTCAGGTGTTCATCATGCCGGTTTGTGACAGAAATCGGGGCAATCAAAGACACTATTAAGAAGATGTTTAAGGACAATTACCTCAACTTATACACAACTGATGTGGATACTACAGGTTGGATACACACCAAGTGTGGCTTTCCAAGCATGGAAGAAAGCATATTAGATCAGTTGAATGAAGAGTTGAAAGAGAAAATAAAGAATGATGTTTATGACATGGCTCCTTGGAAATCTCCAAGTCCAGATGGATACCGTGTAGGCTTTTATCAAAACTCTTGA 411 0.4161 MVCGSCRRLLSYPSGHFFPAADQVGQVKCGSCTLLLMYPYGASQVRCSSCRFVTEIGAIKDTIKKMFKDNYLNLYTTDVDTTGWIHTKCGFPSMEESILDQLNEELKEKIKNDVYDMAPWKSPSPDGYRVGFYQNS 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00781 136 Pfam LSD1 zinc finger 29 53 IPR005735 -
Vifa5g00781 136 NCBIfam zinc finger domain, LSD1 subclass 26 54 IPR005735 -
Vifa5g00781 136 NCBIfam zinc finger domain, LSD1 subclass 1 15 IPR005735 -
Vifa5g00781 136 PANTHER PROTEIN LSD1 1 59 IPR040319 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00781 Vifa-Chr5 232515783 232516615 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Vifa5g00781 zinc_ribbon_12 1.3e-05 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00781 - - psat:127106613 104.375