Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00780 ATGGCTATCCAAGAAGCTTTGTTAGACAAGCCAAGAAAATCGATTCCAAAAACATTTTGGTTAATCCTCTCTTTAGCTGCTATCATAAGCTCATCAGCCCTTATTGCTACTCATCTCAAGAAACCAACCTCCTTCTTCCACTTCTCTTCAGCTCCAAATCTGTGTGAGCATGCTCTTGATACAGAAGCATGCTTAACTCATGTATCTGAAGTTGTTCAAGGCCCAACCTTGGCTAGCACAAAAGACCACAAATTGAGTACACTCATATCCTTATTAACCAAGTCCACCACACACATTCAAGAAGTCATGAACAGAGCCAATGTTATAAAACGCCGAGTTAACGGTCCTAGAGAGGAGACAGCTTTGAATGACTGTGAGCAACTAATGGACTTGTCCATGGATAGAGTTTGGGACTCAGTGTTGACTCTAACAAAAAATAACGTTGAATCAGAGCAAGATGCACACACATGGCTAAGTAGTGTACTCACTAACCATGCAACATGTTTGGATGGTTTAGAAGGTGCGTCTAGGGCCGTGATGGAAAATGATCTTCAGGACTTGATATCCAGAGCTAGATCTTCTCTTGCTGTGCTTGTTTCTGTCTTACCTAAACCGGATCACAAGGAATTCATTGATGAATCATTGAATGGGGAGTTTCCCTCGTGGGTTTCAAACAAGGATAGGAGGCTTTTGGAGTCTAGAATTGGGGACATTCAGGCCAATGTTGTGGTGGCTAAAGATGGGAGCGGTAAGTTCAAGACTGTGGCTGAGGCTGTGGCAACTGCACCAGACAACGGTAAGACAAGGTATGTTATCTATGTGAAAAGGGGAACCTACAAAGAGAAGGTAGAAATCGGTAAGAAAAAGACGAATGTTATGCTTGTCGGTGATGGTATGGATGCAACAATAATCACAGGCAGCTTGAATTTTATCGATGGAACAACCACTTTCAATAGTGCAACTGTTGCTGCTGTTGGGGATGGGTTTATAGCTCAGGACATTGGGTTCCAAAACACGGCAGGCCCAGAAAAGCACCAGGCAGTTGCTCTCCGTGTAGGCGCGGATCAATCTGTCATCAACCGTTGTAAAATTGACGCATTTCAAGACACTCTCTACGCACACTCCAACCGACAATTTTACCGTGACTCCTACATTACCGGTACTGTCGACTTTATCTTCGGAAACGCAGGTGTTGTGTTCCAGAAGAGCAAACTTGTGGCCCGAAAGCCTATGAGCAACCAAAAAAACATGGTGACGGCCCAAGGTCGAGAAGACCCAAACCAGAACACTGCAACTTCAATTCAGCAATGTGATGTAATACCAAGCTCGGACCTCAGGGCCGTGCAAGGCACTATCAAAACATACCTAGGCCGTCCGTGGAAGAAATACTCCAGGACTGTTGTTTTGCAGTCTGTCGTGGACGGCCATATTGACCCAGCAGGATGGGCTGAATGGGATGCTGCGAGTAAGGATTTTCTGCAAACATTGTATTATGGAGAGTACTTAAACAGTGGAGCAGGTGCTGGTACCAGCAAGAGAGTGACTTGGCCTGGTTATCATGTCATCAAAACTGCTGCAGAGGCTAGCAAGTTTACAGTAACACAGCTCATCCAAGGTAATGTTTGGTTGAAGAACACAGGGGTGGCCTTCATCGCAGGCCTGTAG 1665 0.4523 MAIQEALLDKPRKSIPKTFWLILSLAAIISSSALIATHLKKPTSFFHFSSAPNLCEHALDTEACLTHVSEVVQGPTLASTKDHKLSTLISLLTKSTTHIQEVMNRANVIKRRVNGPREETALNDCEQLMDLSMDRVWDSVLTLTKNNVESEQDAHTWLSSVLTNHATCLDGLEGASRAVMENDLQDLISRARSSLAVLVSVLPKPDHKEFIDESLNGEFPSWVSNKDRRLLESRIGDIQANVVVAKDGSGKFKTVAEAVATAPDNGKTRYVIYVKRGTYKEKVEIGKKKTNVMLVGDGMDATIITGSLNFIDGTTTFNSATVAAVGDGFIAQDIGFQNTAGPEKHQAVALRVGADQSVINRCKIDAFQDTLYAHSNRQFYRDSYITGTVDFIFGNAGVVFQKSKLVARKPMSNQKNMVTAQGREDPNQNTATSIQQCDVIPSSDLRAVQGTIKTYLGRPWKKYSRTVVLQSVVDGHIDPAGWAEWDAASKDFLQTLYYGEYLNSGAGAGTSKRVTWPGYHVIKTAAEASKFTVTQLIQGNVWLKNTGVAFIAGL 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00780 554 CDD PMEI-like_4 57 201 - -
Vifa5g00780 554 ProSitePatterns Pectinesterase signature 1. 266 285 IPR018040 -
Vifa5g00780 554 PANTHER PECTINESTERASE 28 544 - -
Vifa5g00780 554 Pfam Plant invertase/pectin methylesterase inhibitor 53 192 IPR006501 GO:0004857
Vifa5g00780 554 Gene3D - 235 554 IPR012334 -
Vifa5g00780 554 SUPERFAMILY Pectin lyase-like 239 553 IPR011050 -
Vifa5g00780 554 Gene3D Invertase/pectin methylesterase inhibitor family protein 52 201 IPR035513 -
Vifa5g00780 554 ProSitePatterns Pectinesterase signature 2. 385 394 IPR033131 -
Vifa5g00780 554 FunFam Pectinesterase 236 554 - -
Vifa5g00780 554 Pfam Pectinesterase 241 540 IPR000070 GO:0030599|GO:0042545
Vifa5g00780 554 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 53 182 IPR035513 -
Vifa5g00780 554 SMART PMEI_2 47 197 IPR006501 GO:0004857
Vifa5g00780 554 NCBIfam pectinesterase inhibitor domain 23 181 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00780 Vifa-Chr5 232312413 232314150 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00780 5 550 Carbohydrate Esterase AT1G11580 55.835 0.0 603
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00780 K01051 - gmx:100815836 853.973