Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00770 ATGGCTACTGAATATCCTGAGGCTAACAAGGTAGTCCAGTTTTTCATGATCATTACTGAAAATCGTGAACAAGGAGAGCTTATGTTACCAATAAAGTTTGTGAGGAAACATGGACAAGGTTTACCAAATGTTATATGTCTAAAGACTTCCAATGGAGAAAACTGGAAAATAAATTTGGTGATGAATGATGGCAAAATATGGTTTGGACAAGGTTGGAAGGAATTTGCACAGTATTATTCTCTAGGTTATGGCCATCTTCTCGTTTTTAAATATCAAAGACTTTCCGAATTTCATGTTGACATCTTTGATACTACTAGAGTAGAGATAGAGTACCCTCCTAAAAGAGTTGAAGCTGAAAAAGAATGTAAGAAGAGAAAAGCTAACTCTTCCTTTGAATTTGGAAGCACTAGTTGTGCCAAAAATAGCAAAGGAAAACAAGTGAATACAAGACTTGAATGCGCAAAAGATTTCAAAACATCTAATCCATCCTTTATTCTTGTCATGTGTACAACACATGTTGAAAGCCGATTTCTTTTTACAATTCCTTGTGAATTTGGTAGGACACATTTTGACTTAGAAAAGAAGATGGGAGACATTTATTTTCGAGTGTTAGATGATGAAAGAGTTTGGCCTGCACAGTACAAAATTAGGATGATCAAAGGAAGAACAAGGTTTGATGTCACAAGTGGATGGCTGGAGTTCTCAAAGAACAATAATTTGGAAGTCGGTGATGTTTGTAAGTTTGAACTCGTTCTTAAAACAAATATGACTCTTCAAGTTCACATCTTTAGAAAGACAAATGAAGTCAACTTAGATTGTTCAACATATGCAAAATCTTCTCAACAAAAAGATAAAGCTACTACTCAAGGATAG 873 0.3471 MATEYPEANKVVQFFMIITENREQGELMLPIKFVRKHGQGLPNVICLKTSNGENWKINLVMNDGKIWFGQGWKEFAQYYSLGYGHLLVFKYQRLSEFHVDIFDTTRVEIEYPPKRVEAEKECKKRKANSSFEFGSTSCAKNSKGKQVNTRLECAKDFKTSNPSFILVMCTTHVESRFLFTIPCEFGRTHFDLEKKMGDIYFRVLDDERVWPAQYKIRMIKGRTRFDVTSGWLEFSKNNNLEVGDVCKFELVLKTNMTLQVHIFRKTNEVNLDCSTYAKSSQQKDKATTQG 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00770 290 PANTHER B3 DOMAIN-CONTAINING 10 261 - -
Vifa5g00770 290 ProSiteProfiles B3 DNA-binding domain profile. 12 105 IPR003340 GO:0003677
Vifa5g00770 290 Gene3D - 7 106 IPR015300 -
Vifa5g00770 290 CDD B3_DNA 24 103 IPR003340 GO:0003677
Vifa5g00770 290 ProSiteProfiles B3 DNA-binding domain profile. 164 266 IPR003340 GO:0003677
Vifa5g00770 290 CDD B3_DNA 162 264 IPR003340 GO:0003677
Vifa5g00770 290 SUPERFAMILY DNA-binding pseudobarrel domain 158 266 IPR015300 -
Vifa5g00770 290 Gene3D - 143 268 IPR015300 -
Vifa5g00770 290 SMART B3_2 164 266 IPR003340 GO:0003677
Vifa5g00770 290 SMART B3_2 14 105 IPR003340 GO:0003677
Vifa5g00770 290 SUPERFAMILY DNA-binding pseudobarrel domain 10 104 IPR015300 -
Vifa5g00770 290 Pfam B3 DNA binding domain 164 265 IPR003340 GO:0003677
Vifa5g00770 290 Pfam B3 DNA binding domain 20 104 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00770 Vifa-Chr5 229231085 229232375 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00770 113 264 B3 DNA Binding Superfamily AT3G18990 29.299 5.43e-10 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vifa5g00770 B3 1e-15 CL0405