Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00769 ATGGCATTTGGTAGTGATTTTCCTCCGATTCATTTTTTCAAGATAATAGTTAGTGAAAGTCTTGATCAAGGAAAGCTTATGATACCGATAAAGTTTGTCAAGAAATATGGAGAATGTTTACCAACATCTATATGTTTAAAGACTCCCAATGGTGCTGATTGGAAAATAAATTTAGAGAAAAATGATTGCAAGATATGGTTTGAAAAGGGTTGGAAAGAATTTGCAGAGTATCATTCTCTATCTCATGGCCATCTTCTACTTTTCAAATATGGAAAAACTTGCTATTTTGAGGTAAGAATCTTTGATAATAGTGGTTTAGAGATAAAGTATCCTTTCAAAAGAGTTGAAGTCAATAATGAAGAAGATTGTGGAGCAAGTCAAAAGAGAAAAGCTTACTCCTCCTTTGAAATTGGAAGCACTAGTTGTGTTAAAGTTGTGAAATCACAAAAGGTAGAAGCTGTATGTCATACTCACAAAAAGCGCAAAGGAAAACAAGTGAATACAACACTTGAAAGAGCAAAAGAGTTCAAAACATGTAATCCATCTTTTGTTATTTTCATGGGTGCTTCATACGTTAAAAGCCGTTTTGTGTTGTCTGTACCTACTATGTTTGGTAAGACACACTTTGATATGGACAAGAAGAAAGGATGTATTTATTTTGAGGTATCAAATAATGAAACTGTTTGGCCTGCAAAGTACTCAATGAGGATGTTCAATAATGGACGAATGAAGTTTGAAATCACGGGTGGATGGATGAAATTCTCAAAGGACAATAATTTGAAAGTTGGTGATGTTTGCAACTTTGAGCTCATTCTTAGTACTAACATGACCTTCCTTGTTCACATATTTAGAAAGACAAATGAAGTCAACACAGCTTGTTCAACATCTGCAAATTCTTCCCAAATGAAAATAGAAGCTGCTCAAGGATAG 930 0.3398 MAFGSDFPPIHFFKIIVSESLDQGKLMIPIKFVKKYGECLPTSICLKTPNGADWKINLEKNDCKIWFEKGWKEFAEYHSLSHGHLLLFKYGKTCYFEVRIFDNSGLEIKYPFKRVEVNNEEDCGASQKRKAYSSFEIGSTSCVKVVKSQKVEAVCHTHKKRKGKQVNTTLERAKEFKTCNPSFVIFMGASYVKSRFVLSVPTMFGKTHFDMDKKKGCIYFEVSNNETVWPAKYSMRMFNNGRMKFEITGGWMKFSKDNNLKVGDVCNFELILSTNMTFLVHIFRKTNEVNTACSTSANSSQMKIEAAQG 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00769 309 CDD B3_DNA 181 284 IPR003340 GO:0003677
Vifa5g00769 309 SUPERFAMILY DNA-binding pseudobarrel domain 8 105 IPR015300 -
Vifa5g00769 309 Gene3D - 160 288 IPR015300 -
Vifa5g00769 309 SMART B3_2 183 286 IPR003340 GO:0003677
Vifa5g00769 309 SMART B3_2 12 104 IPR003340 GO:0003677
Vifa5g00769 309 Pfam B3 DNA binding domain 12 103 IPR003340 GO:0003677
Vifa5g00769 309 Pfam B3 DNA binding domain 183 285 IPR003340 GO:0003677
Vifa5g00769 309 SUPERFAMILY DNA-binding pseudobarrel domain 179 286 IPR015300 -
Vifa5g00769 309 ProSiteProfiles B3 DNA-binding domain profile. 183 286 IPR003340 GO:0003677
Vifa5g00769 309 ProSiteProfiles B3 DNA-binding domain profile. 11 104 IPR003340 GO:0003677
Vifa5g00769 309 PANTHER B3 DOMAIN-CONTAINING 8 280 - -
Vifa5g00769 309 CDD B3_DNA 11 102 IPR003340 GO:0003677
Vifa5g00769 309 Gene3D - 7 105 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00769 Vifa-Chr5 228979847 228986509 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00769 8 284 B3 DNA Binding Superfamily AT3G18990 27.536 1.69e-31 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vifa5g00769 B3 1.1e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00769 - - psat:127131388 439.499