Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00768 ATGGCTACTGAATATCCTGAGGCTAACAAGCTTGTCCAGTTTTTCATGATCATTACTGAAAATCGTCAACAAGGAGAGCTTATGTTACCAATAAAGTTTGTGAGGAAACATGGACAAGGTTTACCAAATGTTATATGTCTAAAGACTTCCAATGGAGAAAACTGGAAAATAAATTTGGTGATGAATGATGGCAAAATATGGTTTGGACAAGGTTGGAAGGAATTTGCACAGTATTATTCTCTAGGTTATGGCCATCTTCTCGTTTTTAAATATCAAACACTTTCCGAATTTCATGTTGACATCTTTGATACTACTAGAGTAGAGATAGAGTACCCTCCTAAAAGAGTTGAAGCTGAAAAAGAATGTAAGAAGAGAAAAGCTAACTCTTCCTTTGAATTTGGAAGCACTAGTTGTGCCAAAAATAGCAAAGGAAAACAAGTGAATACAAGACTTGAAAGCGCAAAAGATTTCAAAACATCTAATCCATCCTTTATTCTTGTCATGTGTACAACAAAGGTTGAAAGCCCATTTCATTTAACAATTCCTTGTAAATTTGGTAGGACACATTTTGACTTAGAAAAGAAGATAGGAGACATTTATTTTCGAGTGTTAGATGACGAAAGAGTTTGGCCTGCACGGTACAAAATTAGGACGATCAAAGGAAGAACAAGGTTTGAAATCACAAGTGGATGGCTGAAATTCTCAAAGAACAATAATTTGGAAGTCGGTGATGTTTGTAACTTTGAACTCATTCTTAAAACAAATATGACTCTTCAAGTTCACATCTTTAGAAAGACAAATGAAGTCAACTTAGATTGTTCAACATATGCAAAATCTTCTCAACAAAAAGATAAAGCTACTACTCAAGGATAG 873 0.3436 MATEYPEANKLVQFFMIITENRQQGELMLPIKFVRKHGQGLPNVICLKTSNGENWKINLVMNDGKIWFGQGWKEFAQYYSLGYGHLLVFKYQTLSEFHVDIFDTTRVEIEYPPKRVEAEKECKKRKANSSFEFGSTSCAKNSKGKQVNTRLESAKDFKTSNPSFILVMCTTKVESPFHLTIPCKFGRTHFDLEKKIGDIYFRVLDDERVWPARYKIRTIKGRTRFEITSGWLKFSKNNNLEVGDVCNFELILKTNMTLQVHIFRKTNEVNLDCSTYAKSSQQKDKATTQG 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00768 290 CDD B3_DNA 16 103 IPR003340 GO:0003677
Vifa5g00768 290 Gene3D - 143 268 IPR015300 -
Vifa5g00768 290 ProSiteProfiles B3 DNA-binding domain profile. 164 266 IPR003340 GO:0003677
Vifa5g00768 290 SUPERFAMILY DNA-binding pseudobarrel domain 158 266 IPR015300 -
Vifa5g00768 290 SUPERFAMILY DNA-binding pseudobarrel domain 11 104 IPR015300 -
Vifa5g00768 290 Gene3D - 7 106 IPR015300 -
Vifa5g00768 290 ProSiteProfiles B3 DNA-binding domain profile. 12 105 IPR003340 GO:0003677
Vifa5g00768 290 CDD B3_DNA 162 264 IPR003340 GO:0003677
Vifa5g00768 290 PANTHER B3 DOMAIN-CONTAINING 10 261 - -
Vifa5g00768 290 SMART B3_2 164 266 IPR003340 GO:0003677
Vifa5g00768 290 SMART B3_2 14 105 IPR003340 GO:0003677
Vifa5g00768 290 Pfam B3 DNA binding domain 20 104 IPR003340 GO:0003677
Vifa5g00768 290 Pfam B3 DNA binding domain 164 265 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00768 Vifa-Chr5 228841788 228843134 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00768 113 264 B3 DNA Binding Superfamily AT3G18990 29.299 2.74e-09 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vifa5g00768 B3 4.2e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00768 - - psat:127131388 340.502