Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00759 ATGCAACTTCACAACCTTTGCATTGTTTTACCACAAAATTCAGGTGAAATAATGAAGCAAAAACATGAACATGGTTCCCAACAACAACAAGAACCAAAGTCTAGAAACCCTTCAAGTGCTTGTGGTGGTGGAGGACAACAAGTTCTTGATTTGCTTCATGATTCTTTGAGCAAGCTATGTAGTGCAAAATGGTGGGGAGGTGCAAAAAGAATTTGCAGACATAGGGGGGTGCAAAAAGCAAAAAAGAAAAACTCTTCAAGAGGTACTTCTACTACTACTACTACTATGTTTCATGACATGGATGGTGTACAATTTGGTGTGAAGATTGGAAGAGACAATCCAAGGATTTTCAGCTATGCAGAACTTTTCATAGGCTCCAATGGTTTCAATGAAGAACAAGTTCTAGGAAGTGGAGGCTTTGGAAAAGTGTACAAAGCACTTTTGCCAAGTGATGGAACTTTGGTTGCTGTGAAATGCTGTTTATCAGAGAAAGGTAAGCAGTTTGACAAGAGTTTCTTAGCCGAGTTATCGGCTGTGGCCGATCTTCGTCACAAGAATCTCGTCCGGTTGAGAGGTTGGTGTGTTCATGAAGATCAACTTCATCTTGTTTATGATTATATGCCGAATCGAAGCCTTGATCGCGTGCTTTTCCGAAAGAAGGAGAATTCGAAAGGCGAGATTCTTGGTTGGGGACAAAGGTGTAGAATTGTGAAAGGTTTGGCTGCTGCATTGTATTATCTGCATGAACAATTAGAAACTCAAATCATTCATAGAGATGTTAAAACTAGTAATGTTATGCTTGATTCGCATTATAATGCCAAGTTAGGCGATTTCGGTATGGCCAGGTGGTTGGAACATGAACTTGAGTATGAGTTTAAGTACAATTACAATAGCAACAGCAACAGCAGCAGCAATAGCAATAAGAAAACTTCGAGTAGAATCGATCATTTCAAGTTGGGGGAAACATCGAAAATCGGTGGGACTATTGGTTATCTTCCACCAGAAAGCTTGCAAAAACCGAGCAACGGTACGTCGAAATGTGATGTATTTAGCTTTGGAATTGTGGTGTTAGAAATTGTATCTGGAAGAAGAGCTATAGATCTAGCATACTCTGATGAGAAAATCATTCTGCTTGATTGGATTCGAAGGCTTTGCGACGAAGGGAAGCTTGTTGAAGCAGCTGATACTAGGCTACAAAAAGATGGATCATCATTCAATTTTTCTGAGATGAAGCATTTCATTCATATAGGCCTTCTTTGCACACTTCATGATCCAAATTTGAGGCCTAATATGAAATGGGTTGTGGAAGCACTTTCTGATTTAAGTTTCACACTTCCTTCACTTCCTTCATTTCTGTCACACCCTCTTTATATCTCTTTGTCTTCACCTTCTGAGACTACTAGTCCTTGTAGCACAAGCGGCACGATCTCGGCCGCGGAAAATGTTAGCTTAATCACAAATTATAATAGTTCAACAAACTATTTCACAGCTGCAGGTGAAACAGTTTATGTGACAGCAGAAAACATAAACAGTGGAAATGTTTCTTCTAAGAGCATGAATCGGAGTCATCACAGGCCGAACTTTCCCGTGGTTGAAACTCCGAGAGAAATTTCATACAAAGAGATTGTTTGTGCTACAAGAAACTTCTCAGAGTCAAGAAGGGTAGCTGAACTAGACTTTGGAACTGCTTATCATGGAGTCCTCGACAACGATTGTCATGTTTTGGTGAAAAGGTTGGGGATGAAGACGTGTCCTGCGCTCCGCGTTCGATTCTCGGACGAACTCAGGAATTTAGGAAAACTTAGGCATCGAAACTTGGTCCAGCTTCGCGGTTGGTGTACCGAACAAGGGGAGATGCTCGTGGTTTATGATTACTCAGCTAGTAGAATTCTCAGTCAGCAACTTCTCCAAATTCATAACAAAGGTGAGAACGGTTCAGTACTCGAATGGAATTATAGGTACAACATAGTTAAATCGCTTGCATCTGCTGTTCATTATCTACACGAAGAATGGGACGAACAAGTGATTCACAGAAACATTACCTCTTCAGCTGTGATTCTCGAACAAGATATGAATCCAAGACTAAGCAGTTTCGCTCTAGCCGAATTCCTATCAAGGAATGAGCATGGAGACCATCATGTAGTCAACGACGGAAGCAAATCCGTTCGAGGGATTTTTGGTTACATGTCACCAGAATATGTCGAATCAGGCGAAGCAACCACGGCTGCGGATGTTTATAGTTTCGGTGTGGTGGTACTTGAAGTTGTAAGTGGACAAATGGCAGTGGACTTTAGGTACCAAGAGGTTCTTTTGGTGAAGAAAGTTCATGAGTTTGTGATGAAGAAAAGACCATTGAAGGAACTAGCTGATGTAAGCCTCAATGGAGAGTATAATGAGAAAGAGTTCATGAGGTTGGTGAGATTAGGAATTGCGTGTACAAGTTCTGATCCTGAATTGAGACCAAGCATGAGACAAATTGTGAGTATTCTTGATGGAAATGATAAATTGCTGAACATGAAAATGAAGGAAAGTAGGGAAGAATGGAGAGAAAGAAATGCTAGTTCTTTGTCAATGGTTAGGAGGATTCAAGCTCTTGGGATACAGTAA 2607 0.4077 MQLHNLCIVLPQNSGEIMKQKHEHGSQQQQEPKSRNPSSACGGGGQQVLDLLHDSLSKLCSAKWWGGAKRICRHRGVQKAKKKNSSRGTSTTTTTMFHDMDGVQFGVKIGRDNPRIFSYAELFIGSNGFNEEQVLGSGGFGKVYKALLPSDGTLVAVKCCLSEKGKQFDKSFLAELSAVADLRHKNLVRLRGWCVHEDQLHLVYDYMPNRSLDRVLFRKKENSKGEILGWGQRCRIVKGLAAALYYLHEQLETQIIHRDVKTSNVMLDSHYNAKLGDFGMARWLEHELEYEFKYNYNSNSNSSSNSNKKTSSRIDHFKLGETSKIGGTIGYLPPESLQKPSNGTSKCDVFSFGIVVLEIVSGRRAIDLAYSDEKIILLDWIRRLCDEGKLVEAADTRLQKDGSSFNFSEMKHFIHIGLLCTLHDPNLRPNMKWVVEALSDLSFTLPSLPSFLSHPLYISLSSPSETTSPCSTSGTISAAENVSLITNYNSSTNYFTAAGETVYVTAENINSGNVSSKSMNRSHHRPNFPVVETPREISYKEIVCATRNFSESRRVAELDFGTAYHGVLDNDCHVLVKRLGMKTCPALRVRFSDELRNLGKLRHRNLVQLRGWCTEQGEMLVVYDYSASRILSQQLLQIHNKGENGSVLEWNYRYNIVKSLASAVHYLHEEWDEQVIHRNITSSAVILEQDMNPRLSSFALAEFLSRNEHGDHHVVNDGSKSVRGIFGYMSPEYVESGEATTAADVYSFGVVVLEVVSGQMAVDFRYQEVLLVKKVHEFVMKKRPLKELADVSLNGEYNEKEFMRLVRLGIACTSSDPELRPSMRQIVSILDGNDKLLNMKMKESREEWRERNASSLSMVRRIQALGIQ 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00759 868 SMART serkin_6 129 443 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g00759 868 MobiDBLite consensus disorder prediction 18 44 - -
Vifa5g00759 868 ProSiteProfiles Protein kinase domain profile. 129 457 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g00759 868 Gene3D Transferase(Phosphotransferase) domain 1 207 443 - -
Vifa5g00759 868 FunFam Receptor like protein kinase S.2 508 625 - -
Vifa5g00759 868 FunFam Receptor like protein kinase S.2 627 853 - -
Vifa5g00759 868 CDD STKc_IRAK 560 832 - -
Vifa5g00759 868 Gene3D Phosphorylase Kinase; domain 1 103 206 - -
Vifa5g00759 868 SUPERFAMILY Protein kinase-like (PK-like) 114 471 IPR011009 -
Vifa5g00759 868 SUPERFAMILY Protein kinase-like (PK-like) 523 830 IPR011009 -
Vifa5g00759 868 ProSitePatterns Serine/Threonine protein kinases active-site signature. 255 267 IPR008271 GO:0004672|GO:0006468
Vifa5g00759 868 FunFam Receptor like protein kinase S.2 207 444 - -
Vifa5g00759 868 ProSiteProfiles Protein kinase domain profile. 549 837 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g00759 868 PANTHER - 92 440 - -
Vifa5g00759 868 Pfam Protein kinase domain 129 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g00759 868 Gene3D Transferase(Phosphotransferase) domain 1 632 857 - -
Vifa5g00759 868 ProSitePatterns Protein kinases ATP-binding region signature. 135 158 IPR017441 GO:0005524
Vifa5g00759 868 Pfam Protein tyrosine and serine/threonine kinase 554 830 IPR001245 GO:0004672|GO:0006468
Vifa5g00759 868 Gene3D Phosphorylase Kinase; domain 1 509 625 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00759 Vifa-Chr5 226706371 226708977 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00759 534 858 Receptor kinase-like Gene Family AT3G59740 33.537 3.54e-48 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vifa5g00759 PK_Tyr_Ser-Thr 1.4e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00759 - - gmx:100796108 1227.23