Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00757 ATGTCCTTCAATCAATCAAAGTCCGATAAGAGTGACCGACGCTCCGCCCGATCCGGAAGCTTCAATCAGCACCGAGGTAACTCCGGCGGTTCTTACGTTAAGGACGGCACCGGCGCCGCCGTGCCTTCTCCTGCACTCTCGTCTTCCCGGAGTTTTAATAAGAAGTCTAATAATCATGCACAAGGTGGACCACCTAGGGTAAACCCTACCCCAGCAAATGCAAATTCAGTAAACCCTACTCCGGCAAATGCGAATTCTGCCGAGTTAAATTATGCTTCTGTAGTCCGGGCAACACCGAATGGTTCTCATGTACAGCCACAATTTCATGGAGGGTCTGATGCATCAATTACAAGTGCAACTACCAAGCCATCTGAAACATCAGCTGCCCAGAGGAGCACCCGGGTTGTTCCTAAAGCTCCTATTTCTCAACCTCCCCCCGTGAGTTCTGATTCAGCAGCTCCTACGACCCCAGCTAAAGGAGATGCATCGAAAGCATTCCCTTTCCAATTTGGATCTATTAGTCCGGGCATTATGAATGTGATGACTATTCCTGCTCGCACAAACTCGGCTCCTCCTAATATAGATGAGCAGAAACATGATCAGGCCCGTCATGATTCTTCAAGACCTGTGCCTTCTGTGCCGACACCTGCTGTTCCAAAGCAGCTTCCTGTTCCAAAGCCGCTGCCAGCTAATAAGGATACTGGTGTCGTTGACCAATCTAAGGGTGGGGAGACTCATACTGGTACAAGGGCAAAAAAAGACACTCAATCGACACATTTACCTCCACCAAGCTTGATGCACAAGCCTTCTGTCATTCCTATATCTGGGATGTCAATGCCAATGCCATATCACCAGCCACATGCACCTGTACACTTTGGTGTTCCTAATCCACAAATTCAACCTCGTAGTATGTCAACAACATCTCTTCAGAGGCCTTTACCAATTGCAAACGCTGCGCAGATGCAACACCAAGTATTCGTTCCAAGTTTTCAACCTCATCCTATGCATCCTCAAGGAATCATGCATCAAGGCCAAAGTATGGGTTTCACTCCTCAAATTGGTCATCAAATGGTCCATCAGTTAGGCAACATTGGTATGGGCATCAGTCCCCAATATTCTCCTCAGCAAGGAGGAAAATTTGCAGCTCCGCCTCCTCGTAAAACTACTCCCGTGAAAATAACTCACCCTGATACTCACGAAGAGCTTAGACTTGATAAAAGGGCCAATGCATATTCAGATGGTGGGTCATCTGGTGCTAGGCCTCATTCTGTCATTCCTTCTCAATCTCCGTCTGTGCAGTCATTTCCTGCTTCTCATCCTAGTAATTACTATCAATCCAATTCTCCCTTTTATCAAACTCCCAGTTCTCTTCCATTATCAAGTAGCCAGATAACCCCCACCACCCAGCCACCAAGAATAAATTATCCAGCGAATCGCGGGCCACCAAATGTTGGTTTCGCAAATTCAGTGTCTCATAATTCCCTGCCCGTTAATAAAACAGTTGCTTCTATTTCTGGCATTGTTGAACCACCTAATCGAGAATTTTCCCGTGATGTGCCGAGTGCGATCTCATCAACTGTGTCTAGAGCGTCTTATGTGTCTATAAAGCCAAGTGGGTCTGGTGTTGTGATCTCATCATTTTCCGATTCAATTTCTGGTGCTAAAAAAGATGGATCTCCTAGTTCCCTGGTAACATCTAGTGATGCATGCTCTTCTGTGCCACCAAAAGGGTCTGACACTTGTTCTGAAATCTCTTCCGAACAATCTACCGTTGCATCTTGTGAGAAGCTTACATCAGCTTCCTTGTTGCCTTCTTCATCTTCCTTGAGTAAGAATATGGTTCCAGATGTATCCAAAAACGAGGGCAGAAACAAGGAAACTCTTAGTAGGTCAAATTCTTTGAAGGATAATCAGAAGAAAGAACAGTTGCAGAATCAGGTGGCTGTACGATCTTCTGATGTGGCCAATGAACCTTCCCTAGCTGTTGATGGTGCTACTTCTGATTGTGTAGCAGTTGACGGTGAAAATTTATCAGCAGCCGCTTCAGGCAAATTATCAGCTACCAGTGAGAGCCTGCCTTCTGTGACACTTGAGGAAAAGACCATTTGTTCTAGACAGGTCTCTGTTTGTGTTGCAGCTGAAGGATCTGTTACTCAAGCTGTTATTAGTTTGAACAATCATAACAGTGCTAAGATAGATGAATTATCCCAAGAGGATAAACTGTTAAGACAGACCGTTTCAACTCTTCAGGGATGTAAAAATGTTAGTGACGGCAGGACAGAATTTAATCAACTCAAACAGGGTGTTACAGAGTTAAGCACTGAGGATGTAACTTTAAAGACTGGACAACAAGGGCAGGGTGGATCTACAAGTTACAGCACAGAATGTGACAGGATGTCTAATAATTTAAACACGTCTACCTCTACTGCATTGGATTCTAAAGAAATAACTTCAGAACACTGGAAGGAGAGTTCAGAGGATGCTATTGCTGGCAGTGGCTCCATGTCTCTTCCAGCACCACCGAGTACTACGGACCGACCAAGTTTAGAGCCAAGTAAAGTGAAAGCTTCGTCAAAAGGAAAAAAGAAAAGAAAAGAGGTTCTTCTGAAAGCAGATGCTGCTGGGATGACATCTGATCTTTATAACGCATATAAGAGACCCGAGGAAAAGAAAGAGGCTGTTGTCAGTTTGGAGAACACTGGATGTGTTTCTCCTTCTGGAAATTTGAAGCAGTTGCCTGTGAATGCTTCTCAGCCAAATGCAGTTGCAAATGAACAATTCAGGCAGAGTAAGGCTGAACTTGAGGACTGGGAGGATGTCGCTGACATGTCCACACCAAAACTAGAAGTATCAAATAAAACTCAACTGGTCGGCGACGAAAGTGCAGTTACTGACAAAAAATACTCTCGAGATTTTCTTTTGAAATTTGCAGAGCATTGGACGGATCTTCCTGAAGGGTTTGAAATCTCGTCAGACATGGAGGCTTTGATGACTTCCAGTGTTAGTTCTCATGTTATTGAACGTGATTCACATCCTTCTGCTAGAAGAAATACAGATAGGTCGGGTGGAATGTCTCGGATGGATCGTCGTGGGAGTGGTGTTGTTGAGGACGATAAATGGAGTAAAGCGTCTGGTGTTGTTGGTAGTGGAGGTAATACAGGACTTAGATCTGGCCAAGTAGGCAATTTTGGCGTTTTAAGGAGTCCACGCCCACAGGGAATGCAATATGGGGGAGGGATTCTCTCTGGGCCAATGCAATCCATGGTAAATCAGGGAGGAATGCAAAGAAATAACCCTGATGGTGAAAGGTGGCAGCGTAGTGCTAGCTTCCAGCAGAGGGGTTTAATTCCATCTCCTTCTCAATCTCCTATGCAGATGATGCACAAAGCTGAGAAGAAGTATGAGGTTGGTAAAGTGACAGACGAGGAACAGGCGAAGCAGAGGCAATTGAAGGGTATATTGAACAAGTTAACTCCACAGAATTTTGAGAAGCTTTTTGAGCAGGTCAAAGCAGTTAATATAGACAATGCAGTCACTCTCACTGGTGTCATCTCACAAATCTTTGAGAAGGCCTTGATGGAACCTACCTTCTGTGAAATGTATGCCAATTTTTGTTTTCATCTGGCAGCTGCATTGCCTGATCTCAGTCAAGACAATGAAAAGATAACATTTAAGAGATTACTGTTAAACAAGTGCCAAGAAGAATTTGAAAGGGGTGAGAGAGAGCAAGAAGAAGCTAATAAAGCTGATGAGGGTGAGGTGAAACAGTCTGATGAGGAAAGAGAAGCAAAACGATCCAAGGCTAGAAGACGGATGTTGGGTAATATCAGGCTAATTGGAGAACTATATAAGAAGAGAATGCTAACAGAGAGGATAATGCACGAGTGCATCAAAAAGTTATTGGGTCAGTGTCAGAATCCTGATGAAGAAGATATTGAAGCTTTATGCAAACTGATGAGTACTATTGGGGAGATGATTGATCACCCCAAAGCCAAGGAACATATGGATGTATATTTTGAAAGGATTAAATTATTATCAAACAACATGAGTTTATCTTCTAGGGTGAGGTTCATGTTGAAGGATACCATTGATTTAAGAAAGAATAGATGGCAACAAAGAAGAAAAGTTGAAGGTCCTAAGAAGATTGAAGAGGTGCACCGAGATGCTTCCCAAGAGAGGCAATCCCAAGCTGGTAGGCTGGGTCGTGGTATGGGTATTAGTGCAGCAAGAAGGGTCCCTATGGATTTTGGTTCAAGAGGTTCATCTATGTTATCCCCTCCTAACTCTCAGATGGGTGGATTGCCTACTCAAGTTCGTGGGTATGGTTCTCAGGATGTTCGTGGTTATGAAAGGCAATCATCGTATGAGGCTAGGACACTGTCTATTCCCTTGCCTCAAAGGCCTTTAGCCGATGAGTCAATAAATTTGGGACCCCAAGGTGGTCTGGCTAGAGGAATGTCCATTAGAGGTCCTCCTACAGTTTCAAGTTCTACTGCTCTTAATGGTTATAGTAATTTATCTGAACAGGCCTCATACGGCTCTAGGGAGGACCACTCTTCGAGATATGTTCCGGATAGATTTTCTGGTCCAGCTGCTTATGATCAATCAAGTGTTCCAGAGCAAAATATGAATTATGGTAACAGGGACTTGAGAAATGTAAATAGTAGGATTTTTGATAAACCTGTTGGAAATCCACCTCCTGCCCTAGCACAAGAGACATCAGGCGCCCAGAATGCCTCTTCAGAAAACGGTTTGTCTGAAGAGCAACTACAGAACATGTCCTTGGCAGCAATTAAAGAATACTATAGTGCTAATGACGTGAACGAAGTTGTTTTGTGTGTCAAAGATCTGAATTCTCCAAGCTTTCATCCTTCCATGGTTTCTGTCTGGGTCACAGACTCATTTGAGAGAAAGGACATACATCGAGATCTTTTAGCCAAACTGTTGATCAACCTTGTGCAGCGTCATGGTGGCACCTTAAGTCAAGCCCAGCTCATTAAAGGGTTTGAATCTGTTCTAAGTACTTTGGAAGATGTGGTTACGGATGCTCCAAAAGCACCGGAGTTTCTTGGCCGCATTTTCGCTAAAGCTATAACAGAAGACGTAGTCTCTTTGAAGGAGATTGGGCGGTTAGTACACGACGGAGGAGATGAACCAGGGCGCCTCTTACAAATTGGACTTGCAGCTGATGTTCTTGGAAGCACATTAGAAATGATACAAACCGAGAAGGGTGAAGCCTTTTTGGCCGAGATCCAGACAAGCTCTAACTTGCAATTGCAGACTTTCCAGCCACCAGGGCCGACTAAATCACGAAAACTAGAAAAATTTATTTAG 5334 0.4409 MSFNQSKSDKSDRRSARSGSFNQHRGNSGGSYVKDGTGAAVPSPALSSSRSFNKKSNNHAQGGPPRVNPTPANANSVNPTPANANSAELNYASVVRATPNGSHVQPQFHGGSDASITSATTKPSETSAAQRSTRVVPKAPISQPPPVSSDSAAPTTPAKGDASKAFPFQFGSISPGIMNVMTIPARTNSAPPNIDEQKHDQARHDSSRPVPSVPTPAVPKQLPVPKPLPANKDTGVVDQSKGGETHTGTRAKKDTQSTHLPPPSLMHKPSVIPISGMSMPMPYHQPHAPVHFGVPNPQIQPRSMSTTSLQRPLPIANAAQMQHQVFVPSFQPHPMHPQGIMHQGQSMGFTPQIGHQMVHQLGNIGMGISPQYSPQQGGKFAAPPPRKTTPVKITHPDTHEELRLDKRANAYSDGGSSGARPHSVIPSQSPSVQSFPASHPSNYYQSNSPFYQTPSSLPLSSSQITPTTQPPRINYPANRGPPNVGFANSVSHNSLPVNKTVASISGIVEPPNREFSRDVPSAISSTVSRASYVSIKPSGSGVVISSFSDSISGAKKDGSPSSLVTSSDACSSVPPKGSDTCSEISSEQSTVASCEKLTSASLLPSSSSLSKNMVPDVSKNEGRNKETLSRSNSLKDNQKKEQLQNQVAVRSSDVANEPSLAVDGATSDCVAVDGENLSAAASGKLSATSESLPSVTLEEKTICSRQVSVCVAAEGSVTQAVISLNNHNSAKIDELSQEDKLLRQTVSTLQGCKNVSDGRTEFNQLKQGVTELSTEDVTLKTGQQGQGGSTSYSTECDRMSNNLNTSTSTALDSKEITSEHWKESSEDAIAGSGSMSLPAPPSTTDRPSLEPSKVKASSKGKKKRKEVLLKADAAGMTSDLYNAYKRPEEKKEAVVSLENTGCVSPSGNLKQLPVNASQPNAVANEQFRQSKAELEDWEDVADMSTPKLEVSNKTQLVGDESAVTDKKYSRDFLLKFAEHWTDLPEGFEISSDMEALMTSSVSSHVIERDSHPSARRNTDRSGGMSRMDRRGSGVVEDDKWSKASGVVGSGGNTGLRSGQVGNFGVLRSPRPQGMQYGGGILSGPMQSMVNQGGMQRNNPDGERWQRSASFQQRGLIPSPSQSPMQMMHKAEKKYEVGKVTDEEQAKQRQLKGILNKLTPQNFEKLFEQVKAVNIDNAVTLTGVISQIFEKALMEPTFCEMYANFCFHLAAALPDLSQDNEKITFKRLLLNKCQEEFERGEREQEEANKADEGEVKQSDEEREAKRSKARRRMLGNIRLIGELYKKRMLTERIMHECIKKLLGQCQNPDEEDIEALCKLMSTIGEMIDHPKAKEHMDVYFERIKLLSNNMSLSSRVRFMLKDTIDLRKNRWQQRRKVEGPKKIEEVHRDASQERQSQAGRLGRGMGISAARRVPMDFGSRGSSMLSPPNSQMGGLPTQVRGYGSQDVRGYERQSSYEARTLSIPLPQRPLADESINLGPQGGLARGMSIRGPPTVSSSTALNGYSNLSEQASYGSREDHSSRYVPDRFSGPAAYDQSSVPEQNMNYGNRDLRNVNSRIFDKPVGNPPPALAQETSGAQNASSENGLSEEQLQNMSLAAIKEYYSANDVNEVVLCVKDLNSPSFHPSMVSVWVTDSFERKDIHRDLLAKLLINLVQRHGGTLSQAQLIKGFESVLSTLEDVVTDAPKAPEFLGRIFAKAITEDVVSLKEIGRLVHDGGDEPGRLLQIGLAADVLGSTLEMIQTEKGEAFLAEIQTSSNLQLQTFQPPGPTKSRKLEKFI 1777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00757 1777 ProSiteProfiles MI domain profile. 1589 1713 IPR003891 -
Vifa5g00757 1777 Gene3D - 1581 1777 - -
Vifa5g00757 1777 MobiDBLite consensus disorder prediction 1372 1401 - -
Vifa5g00757 1777 MobiDBLite consensus disorder prediction 42 137 - -
Vifa5g00757 1777 MobiDBLite consensus disorder prediction 1508 1545 - -
Vifa5g00757 1777 MobiDBLite consensus disorder prediction 1004 1059 - -
Vifa5g00757 1777 MobiDBLite consensus disorder prediction 1 167 - -
Vifa5g00757 1777 MobiDBLite consensus disorder prediction 836 851 - -
Vifa5g00757 1777 MobiDBLite consensus disorder prediction 779 865 - -
Vifa5g00757 1777 MobiDBLite consensus disorder prediction 1560 1585 - -
Vifa5g00757 1777 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 369 1777 IPR045208 GO:0003743
Vifa5g00757 1777 SUPERFAMILY ARM repeat 1141 1371 IPR016024 -
Vifa5g00757 1777 MobiDBLite consensus disorder prediction 605 655 - -
Vifa5g00757 1777 FunFam Eukaryotic translation initiation factor 4G 1583 1776 - -
Vifa5g00757 1777 Pfam MA3 domain 1596 1703 IPR003891 -
Vifa5g00757 1777 SUPERFAMILY ARM repeat 1583 1775 IPR016024 -
Vifa5g00757 1777 Gene3D - 1147 1382 - -
Vifa5g00757 1777 MobiDBLite consensus disorder prediction 1239 1268 - -
Vifa5g00757 1777 MobiDBLite consensus disorder prediction 1570 1585 - -
Vifa5g00757 1777 MobiDBLite consensus disorder prediction 550 584 - -
Vifa5g00757 1777 MobiDBLite consensus disorder prediction 1372 1393 - -
Vifa5g00757 1777 MobiDBLite consensus disorder prediction 638 653 - -
Vifa5g00757 1777 MobiDBLite consensus disorder prediction 779 814 - -
Vifa5g00757 1777 MobiDBLite consensus disorder prediction 392 408 - -
Vifa5g00757 1777 SMART if4_15 1147 1369 IPR003890 GO:0003723|GO:0005515
Vifa5g00757 1777 MobiDBLite consensus disorder prediction 184 266 - -
Vifa5g00757 1777 Coils Coil 1229 1249 - -
Vifa5g00757 1777 MobiDBLite consensus disorder prediction 369 484 - -
Vifa5g00757 1777 MobiDBLite consensus disorder prediction 421 474 - -
Vifa5g00757 1777 Pfam MIF4G domain 1147 1368 IPR003890 GO:0003723|GO:0005515
Vifa5g00757 1777 Coils Coil 920 940 - -
Vifa5g00757 1777 SMART ma3_7 1590 1704 IPR003891 -
Vifa5g00757 1777 MobiDBLite consensus disorder prediction 212 226 - -
Vifa5g00757 1777 MobiDBLite consensus disorder prediction 618 637 - -
Vifa5g00757 1777 MobiDBLite consensus disorder prediction 1008 1037 - -
Vifa5g00757 1777 FunFam Eukaryotic translation initiation factor 4G 1147 1382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00757 Vifa-Chr5 226080524 226087864 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00757 1 1776 Eukaryotic Initiation Factors Gene Family AT3G60240 45.189 0.0 1227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00757 K03260 - gmx:100796636 2247.24