Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00756 ATGTCCTTCAATCAATCAAAGTCCGATAAGAGTGACCGACGCTCCGCCCGATCCGGAAGCTTCAATCAGCACCGAGGTAACTCCGGCGGTTCTTACGTTAAGGACGGCACCGGCGCCGCCGTGCCTTCTCCTGCACTCTCGTCTTCCCGGAGTTTTAATAAGAAGTCTAATAATCATGCACAAGGTGGACCACCTAGGGTAAACCCTACCCCAGCAAATGCAAATTCAGTAAACCCTACTCCGGCAAATGCGAATTCTGCCGAGTTAAATTATGCTTCTGTAGTCCGGGCAACACCGAATGGTTCTCATGTACAGCCACAATTTCATGGAGGGTCTGATGCATCAATTACAAGTGCAACTACCAAGCCATCTGAAACATCAGCTGCCCAGAGGAGCACCCGGGTTGTTCCTAAAGCTCCTATTTCTCAACCTCCCCCCGTGAGTTCTGATTCAGCAGCTCCTACGACCCCAGCTAAAGATGCATCGAAAGCATTCCCTTTCCAATTTGGATCTATTAGTCCGGGCATTATGAATGTGATGACTATTCCTGCTCGCACAAACTCGGCTCCTCCTAATATAGATGAGCAGAAACATGATCAGGCCCGTCATGATTCTTCAAGACCTGTGCCTTCTGTGCCGACACCTGCTGTTCCAAAGCAGCTTCCTGTTCCAAAGCCGCTGCCAGCTAATAAGGATACTGGTGTCGTTGACCAATCTAAGGGTGGGGAGACTCATACTGGTACAAGGGCAAAAAAAGACACTCAATCGACACATTTACCTCCACCAAGCTTGATGCACAAGCCTTCTGTCATTCCTATATCTGGGATGTCAATGCCAATGCCATATCACCAGCCACATGCACCTGTACACTTTGGTGTTCCTAATCCACAAATTCAACCTCGTAGTATGTCAACAACATCTCTTCAGAGGCCTTTACCAATTGCAAACGCTGCGCAGATGCAACACCAAGTATTCGTTCCAAGTTTTCAACCTCATCCTATGCATCCTCAAGGAATCATGCATCAAGGCCAAAGTATGGGTTTCACTCCTCAAATTGGTCATCAAATGGTCCATCAGTTAGGCAACATTGGTATGGGCATCAGTCCCCAATATTCTCCTCAGCAAGGAGGAAAATTTGCAGCTCCGCCTCCTCGTAAAACTACTCCCGTGAAAATAACTCACCCTGATACTCACGAAGAGCTTAGACTTGATAAAAGGGCCAATGCATATTCAGATGGTGGGTCATCTGGTGCTAGGCCTCATTCTGTCATTCCTTCTCAATCTCCGTCTGTGCAGTCATTTCCTGCTTCTCATCCTAGTAATTACTATCAATCCAATTCTCCCTTTTATCAAACTCCCAGTTCTCTTCCATTATCAAGTAGCCAGATAACCCCCACCACCCAGCCACCAAGAATAAATTATCCAGCGAATCGCGGGCCACCAAATGTTGGTTTCGCAAATTCAGTGTCTCATAATTCCCTGCCCGTTAATAAAACAGTTGCTTCTATTTCTGGCATTGTTGAACCACCTAATCGAGAATTTTCCCGTGATGTGCCGAGTGCGATCTCATCAACTGTGTCTAGAGCGTCTTATGTGTCTATAAAGCCAAGTGGGTCTGGTGTTGTGATCTCATCATTTTCCGATTCAATTTCTGGTGCTAAAAAAGATGGATCTCCTAGTTCCCTGGTAACATCTAGTGATGCATGCTCTTCTGTGCCACCAAAAGGGTCTGACACTTGTTCTGAAATCTCTTCCGAACAATCTACCGTTGCATCTTGTGAGAAGCTTACATCAGCTTCCTTGTTGCCTTCTTCATCTTCCTTGAGTAAGAATATGGTTCCAGATGTATCCAAAAACGAGGGCAGAAACAAGGAAACTCTTAGTAGGTCAAATTCTTTGAAGGATAATCAGAAGAAAGAACAGTTGCAGAATCAGGTGGCTGTACGATCTTCTGATGTGGCCAATGAACCTTCCCTAGCTGTTGATGGTGCTACTTCTGATTGTGTAGCAGTTGACGGTGAAAATTTATCAGCAGCCGCTTCAGGCAAATTATCAGCTACCAGTGAGAGCCTGCCTTCTGTGACACTTGAGGAAAAGACCATTTGTTCTAGACAGGTCTCTGTTTGTGTTGCAGCTGAAGGATCTGTTACTCAAGCTGTTATTAGTTTGAACAATCATAACAGTGCTAAGATAGATGAATTATCCCAAGAGGATAAACTGTTAAGACAGACCGTTTCAACTCTTCAGGGATGTAAAAATGTTAGTGACGGCAGGACAGAATTTAATCAACTCAAACAGGGTGTTACAGAGTTAAGCACTGAGGATGTAACTTTAAAGACTGGACAACAAGGGCAGGGTGGATCTACAAGTTACAGCACAGAATGTGACAGGATGTCTAATAATTTAAACACGTCTACCTCTACTGCATTGGATTCTAAAGAAATAACTTCAGAACACTGGAAGGAGAGTTCAGAGGATGCTATTGCTGGCAGTGGCTCCATGTCTCTTCCAGCACCACCGAGTACTACGGACCGACCAAGTTTAGAGCCAAGTAAAGTGAAAGCTTCGTCAAAAGGAAAAAAGAAAAGAAAAGAGGTTCTTCTGAAAGCAGATGCTGCTGGGATGACATCTGATCTTTATAACGCATATAAGAGACCCGAGGAAAAGAAAGAGGCTGTTGTCAGTTTGGAGAACACTGGATGTGTTTCTCCTTCTGGAAATTTGAAGCAGTTGCCTGTGAATGCTTCTCAGCCAAATGCAGTTGCAAATGAACAATTCAGGCAGAGTAAGGCTGAACTTGAGGACTGGGAGGATGTCGCTGACATGTCCACACCAAAACTAGAAGTATCAAATAAAACTCAACTGGTCGGCGACGAAAGTGCAGTTACTGACAAAAAATACTCTCGAGATTTTCTTTTGAAATTTGCAGAGCATTGGACGGATCTTCCTGAAGGGTTTGAAATCTCGTCAGACATGGAGGCTTTGATGACTTCCAGTGTTAGTTCTCATGTTATTGAACGTGATTCACATCCTTCTGCTAGAAGAAATACAGATAGGTCGGGTGGAATGTCTCGGATGGATCGTCGTGGGAGTGGTGTTGTTGAGGACGATAAATGGAGTAAAGCGTCTGGTGTTGTTGGTAGTGGAGGTAATACAGGACTTAGATCTGGCCAAGTAGGCAATTTTGGCGTTTTAAGGAGTCCACGCCCACAGGGAATGCAATATGGGGGAGGGATTCTCTCTGGGCCAATGCAATCCATGGTAAATCAGGGAGGAATGCAAAGAAATAACCCTGATGGTGAAAGGTGGCAGCGTAGTGCTAGCTTCCAGCAGAGGGGTTTAATTCCATCTCCTTCTCAATCTCCTATGCAGATGATGCACAAAGCTGAGAAGAAGTATGAGGTTGGTAAAGTGACAGACGAGGAACAGGCGAAGCAGAGGCAATTGAAGGGTATATTGAACAAGTTAACTCCACAGAATTTTGAGAAGCTTTTTGAGCAGGTCAAAGCAGTTAATATAGACAATGCAGTCACTCTCACTGGTGTCATCTCACAAATCTTTGAGAAGGCCTTGATGGAACCTACCTTCTGTGAAATGTATGCCAATTTTTGTTTTCATCTGGCAGCTGCATTGCCTGATCTCAGTCAAGACAATGAAAAGATAACATTTAAGAGATTACTGTTAAACAAGTGCCAAGAAGAATTTGAAAGGGGTGAGAGAGAGCAAGAAGAAGCTAATAAAGCTGATGAGGGTGAGGTGAAACAGTCTGATGAGGAAAGAGAAGCAAAACGATCCAAGGCTAGAAGACGGATGTTGGGTAATATCAGGCTAATTGGAGAACTATATAAGAAGAGAATGCTAACAGAGAGGATAATGCACGAGTGCATCAAAAAGTTATTGGGTCAGTGTCAGAATCCTGATGAAGAAGATATTGAAGCTTTATGCAAACTGATGAGTACTATTGGGGAGATGATTGATCACCCCAAAGCCAAGGAACATATGGATGTATATTTTGAAAGGATTAAATTATTATCAAACAACATGAGTTTATCTTCTAGGGTGAGGTTCATGTTGAAGGATACCATTGATTTAAGAAAGAATAGATGGCAACAAAGAAGAAAAGTTGAAGGTCCTAAGAAGATTGAAGAGGTGCACCGAGATGCTTCCCAAGAGAGGCAATCCCAAGCTGGTAGGCTGGGTCGTGGTATGGGTATTAGTGCAGCAAGAAGGGTCCCTATGGATTTTGGTTCAAGAGGTTCATCTATGTTATCCCCTCCTAACTCTCAGATGGGTGGATTGCCTACTCAAGTTCGTGGGTATGGTTCTCAGGATGTTCGTGGTTATGAAAGGCAATCATCGTATGAGGCTAGGACACTGTCTATTCCCTTGCCTCAAAGGCCTTTAGCCGATGAGTCAATAAATTTGGGACCCCAAGGTGGTCTGGCTAGAGGAATGTCCATTAGAGGTCCTCCTACAGTTTCAAGTTCTACTGCTCTTAATGGTTATAGTAATTTATCTGAACAGGCCTCATACGGCTCTAGGGAGGACCACTCTTCGAGATATGTTCCGGATAGATTTTCTGGTCCAGCTGCTTATGATCAATCAAGTGTTCCAGAGCAAAATATGAATTATGGTAACAGGGACTTGAGAAATGTAAATAGTAGGATTTTTGATAAACCTGTTGGAAATCCACCTCCTGCCCTAGCACAAGAGACATCAGGCGCCCAGAATGCCTCTTCAGAAAACGGTTTGTCTGAAGAGCAACTACAGAACATGTCCTTGGCAGCAATTAAAGAATACTATAGTGCTAATGACGTGAACGAAGTTGTTTTGTGTGTCAAAGATCTGAATTCTCCAAGCTTTCATCCTTCCATGGTTTCTGTCTGGGTCACAGACTCATTTGAGAGAAAGGACATACATCGAGATCTTTTAGCCAAACTGTTGATCAACCTTGTGCAGCGTCATGGTGGCACCTTAAGTCAAGCCCAGCTCATTAAAGGGTTTGAATCTGTTCTAAGTACTTTGGAAGATGTGGTTACGGATGCTCCAAAAGCACCGGAGTTTCTTGGCCGCATTTTCGCTAAAGCTATAACAGAAGACGTAGTCTCTTTGAAGGAGATTGGGCGGTTAGTACACGACGGAGGAGATGAACCAGGGCGCCTCTTACAAATTGGACTTGCAGCTGATGTTCTTGGAAGCACATTAGAAATGATACAAACCGAGAAGGGTGAAGCCTTTTTGGCCGAGATCCAGACAAGCTCTAACTTGCAATTGCAGACTTTCCAGCCACCAGGGCCGACTAAATCACGAAAACTAGAAAAATTTATTTAG 5331 0.4408 MSFNQSKSDKSDRRSARSGSFNQHRGNSGGSYVKDGTGAAVPSPALSSSRSFNKKSNNHAQGGPPRVNPTPANANSVNPTPANANSAELNYASVVRATPNGSHVQPQFHGGSDASITSATTKPSETSAAQRSTRVVPKAPISQPPPVSSDSAAPTTPAKDASKAFPFQFGSISPGIMNVMTIPARTNSAPPNIDEQKHDQARHDSSRPVPSVPTPAVPKQLPVPKPLPANKDTGVVDQSKGGETHTGTRAKKDTQSTHLPPPSLMHKPSVIPISGMSMPMPYHQPHAPVHFGVPNPQIQPRSMSTTSLQRPLPIANAAQMQHQVFVPSFQPHPMHPQGIMHQGQSMGFTPQIGHQMVHQLGNIGMGISPQYSPQQGGKFAAPPPRKTTPVKITHPDTHEELRLDKRANAYSDGGSSGARPHSVIPSQSPSVQSFPASHPSNYYQSNSPFYQTPSSLPLSSSQITPTTQPPRINYPANRGPPNVGFANSVSHNSLPVNKTVASISGIVEPPNREFSRDVPSAISSTVSRASYVSIKPSGSGVVISSFSDSISGAKKDGSPSSLVTSSDACSSVPPKGSDTCSEISSEQSTVASCEKLTSASLLPSSSSLSKNMVPDVSKNEGRNKETLSRSNSLKDNQKKEQLQNQVAVRSSDVANEPSLAVDGATSDCVAVDGENLSAAASGKLSATSESLPSVTLEEKTICSRQVSVCVAAEGSVTQAVISLNNHNSAKIDELSQEDKLLRQTVSTLQGCKNVSDGRTEFNQLKQGVTELSTEDVTLKTGQQGQGGSTSYSTECDRMSNNLNTSTSTALDSKEITSEHWKESSEDAIAGSGSMSLPAPPSTTDRPSLEPSKVKASSKGKKKRKEVLLKADAAGMTSDLYNAYKRPEEKKEAVVSLENTGCVSPSGNLKQLPVNASQPNAVANEQFRQSKAELEDWEDVADMSTPKLEVSNKTQLVGDESAVTDKKYSRDFLLKFAEHWTDLPEGFEISSDMEALMTSSVSSHVIERDSHPSARRNTDRSGGMSRMDRRGSGVVEDDKWSKASGVVGSGGNTGLRSGQVGNFGVLRSPRPQGMQYGGGILSGPMQSMVNQGGMQRNNPDGERWQRSASFQQRGLIPSPSQSPMQMMHKAEKKYEVGKVTDEEQAKQRQLKGILNKLTPQNFEKLFEQVKAVNIDNAVTLTGVISQIFEKALMEPTFCEMYANFCFHLAAALPDLSQDNEKITFKRLLLNKCQEEFERGEREQEEANKADEGEVKQSDEEREAKRSKARRRMLGNIRLIGELYKKRMLTERIMHECIKKLLGQCQNPDEEDIEALCKLMSTIGEMIDHPKAKEHMDVYFERIKLLSNNMSLSSRVRFMLKDTIDLRKNRWQQRRKVEGPKKIEEVHRDASQERQSQAGRLGRGMGISAARRVPMDFGSRGSSMLSPPNSQMGGLPTQVRGYGSQDVRGYERQSSYEARTLSIPLPQRPLADESINLGPQGGLARGMSIRGPPTVSSSTALNGYSNLSEQASYGSREDHSSRYVPDRFSGPAAYDQSSVPEQNMNYGNRDLRNVNSRIFDKPVGNPPPALAQETSGAQNASSENGLSEEQLQNMSLAAIKEYYSANDVNEVVLCVKDLNSPSFHPSMVSVWVTDSFERKDIHRDLLAKLLINLVQRHGGTLSQAQLIKGFESVLSTLEDVVTDAPKAPEFLGRIFAKAITEDVVSLKEIGRLVHDGGDEPGRLLQIGLAADVLGSTLEMIQTEKGEAFLAEIQTSSNLQLQTFQPPGPTKSRKLEKFI 1776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00756 1776 MobiDBLite consensus disorder prediction 1007 1036 - -
Vifa5g00756 1776 SUPERFAMILY ARM repeat 1582 1774 IPR016024 -
Vifa5g00756 1776 MobiDBLite consensus disorder prediction 391 407 - -
Vifa5g00756 1776 MobiDBLite consensus disorder prediction 549 583 - -
Vifa5g00756 1776 MobiDBLite consensus disorder prediction 42 137 - -
Vifa5g00756 1776 MobiDBLite consensus disorder prediction 1371 1392 - -
Vifa5g00756 1776 MobiDBLite consensus disorder prediction 1 162 - -
Vifa5g00756 1776 MobiDBLite consensus disorder prediction 637 652 - -
Vifa5g00756 1776 FunFam Eukaryotic translation initiation factor 4G 1146 1381 - -
Vifa5g00756 1776 FunFam Eukaryotic translation initiation factor 4G 1582 1775 - -
Vifa5g00756 1776 SUPERFAMILY ARM repeat 1140 1370 IPR016024 -
Vifa5g00756 1776 Gene3D - 1146 1381 - -
Vifa5g00756 1776 MobiDBLite consensus disorder prediction 1003 1058 - -
Vifa5g00756 1776 Gene3D - 1580 1776 - -
Vifa5g00756 1776 Pfam MA3 domain 1595 1702 IPR003891 -
Vifa5g00756 1776 Coils Coil 1228 1248 - -
Vifa5g00756 1776 SMART ma3_7 1589 1703 IPR003891 -
Vifa5g00756 1776 MobiDBLite consensus disorder prediction 617 636 - -
Vifa5g00756 1776 MobiDBLite consensus disorder prediction 211 225 - -
Vifa5g00756 1776 ProSiteProfiles MI domain profile. 1588 1712 IPR003891 -
Vifa5g00756 1776 MobiDBLite consensus disorder prediction 1507 1544 - -
Vifa5g00756 1776 MobiDBLite consensus disorder prediction 835 850 - -
Vifa5g00756 1776 MobiDBLite consensus disorder prediction 778 864 - -
Vifa5g00756 1776 MobiDBLite consensus disorder prediction 1559 1584 - -
Vifa5g00756 1776 MobiDBLite consensus disorder prediction 420 473 - -
Vifa5g00756 1776 Coils Coil 919 939 - -
Vifa5g00756 1776 MobiDBLite consensus disorder prediction 1371 1400 - -
Vifa5g00756 1776 SMART if4_15 1146 1368 IPR003890 GO:0003723|GO:0005515
Vifa5g00756 1776 MobiDBLite consensus disorder prediction 1569 1584 - -
Vifa5g00756 1776 Pfam MIF4G domain 1146 1367 IPR003890 GO:0003723|GO:0005515
Vifa5g00756 1776 MobiDBLite consensus disorder prediction 183 265 - -
Vifa5g00756 1776 MobiDBLite consensus disorder prediction 604 654 - -
Vifa5g00756 1776 MobiDBLite consensus disorder prediction 778 813 - -
Vifa5g00756 1776 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 368 1776 IPR045208 GO:0003743
Vifa5g00756 1776 MobiDBLite consensus disorder prediction 368 479 - -
Vifa5g00756 1776 MobiDBLite consensus disorder prediction 1238 1267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00756 Vifa-Chr5 226080524 226087864 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00756 1 1775 Eukaryotic Initiation Factors Gene Family AT3G60240 45.027 0.0 1224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00756 K03260 - gmx:100796636 2242.62