Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00755 ATGCAGAAGCCTTCTGTTATTCCTCTAGCTGGTATTTCAATGCCAGTGCCATATCACCAGTCACAGGTACCTGTACACTTTGGTGCAAATGAACAATGTGGGCAGAGTAAGTCTGAACCTGAAGACTGGGAGGATGCTGCAGACATGAACGCACCAAAGCTAGAAGTTGCAGAGCAATACTCTGATCTCCCTGAAGGATTTGAAATCACGGCAGCCATAGCTGAAACCTTGATGGGTTCTAATATTGGTTCTCATGTTATCGAACACGACTCACATCCTTCTACCGGGAGAAATTCAGATAGGTCAGGTGGCATGTCTCGGATGGATCGTCGTGGAAGTGGCATTATTGAGGATGATAGATGGAGTAAAGGTTCTGGTGCTTTTCATTCTGATACGCGCTTGGATGGTATTGGAGATAGTGCAGGATCCCGTACTGGCCAAGGAGGTAATTTTGATGCTTTAAGGAATCCACGCACACAGACAGTTATGAAATATGGTGGACGGATTCTCTTTGGGCCAATGGTAAATATGGGAGGAATGCAAAGAAATAGCCTTGATGGTGAAAGGTGGCAGCGTGCTTCTAGCTTCCGGCAGAGGGGTTTAATTCCATCTCCTTCTTCTCAATCTCCTTTGGTGATGATGCACAAAGCTGAGAAGAAGTATGAGGTTGGTAAAGTAACAGATGAGGAACAGGCGAAGCAGAGAGAGTTGAAGGGTATATTGAACAAGTTGAGACAGTTGGAGGGTATATTGAACAAGTTAACTCCACAGAATTTTAAGAAACTTTTTAAGCAGGTAAAAGCAGTTAATATTGACAACGCAGTCACTCTCTCTGGTTTCATCTTACAAATCTTTGAGAAGGCCTTGCTGGAACCTACCCTCTGTGAAATGTATGCCAATTTATGTTCTCATCTGGCAGCTGCATTGCCTGATCTCAGTCAAGACAATGAAAAGATAACATTTAAGAGATTGTTGATAAACATGTGCCAGGAAGAATTTGAGAGGGGTGAAAGAGAGCAAGAAGAGGCTAATCAAGCTGATGAGGGCGAGGTGAAACAGTCTGACGAGGACAGAGAAGCAAAACGTTCCAAGGCTAGAAGACGAATGTTGGGTAATATCAGATTAATTGGAGAGCTATATAAGAAGAGATTCCTGACAGAGAGGATAATGCACGAGTGCATCAAAAAGTTACTGGGTCAGTGTCAGAATCCTGATGAAGATGATATTGAAGCTTTATGCACACTGATGAGTACTATTGGGGATATGATTGATCACCCCAAAGCCAAGGAACATATGGATGTATATTTTGAAAGGATTAAATTATTATCAAACAACATGAGTTTATCTTCTAGGGTGAGGTTCATGTTGAAGGATACCATTGATTTGAGAAAGAATAGATGGCAACAAAGGAGAAAAGTTGAAGGTCCATTGATTTGA 1437 0.4217 MQKPSVIPLAGISMPVPYHQSQVPVHFGANEQCGQSKSEPEDWEDAADMNAPKLEVAEQYSDLPEGFEITAAIAETLMGSNIGSHVIEHDSHPSTGRNSDRSGGMSRMDRRGSGIIEDDRWSKGSGAFHSDTRLDGIGDSAGSRTGQGGNFDALRNPRTQTVMKYGGRILFGPMVNMGGMQRNSLDGERWQRASSFRQRGLIPSPSSQSPLVMMHKAEKKYEVGKVTDEEQAKQRELKGILNKLRQLEGILNKLTPQNFKKLFKQVKAVNIDNAVTLSGFILQIFEKALLEPTLCEMYANLCSHLAAALPDLSQDNEKITFKRLLINMCQEEFERGEREQEEANQADEGEVKQSDEDREAKRSKARRRMLGNIRLIGELYKKRFLTERIMHECIKKLLGQCQNPDEDDIEALCTLMSTIGDMIDHPKAKEHMDVYFERIKLLSNNMSLSSRVRFMLKDTIDLRKNRWQQRRKVEGPLI 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00755 478 MobiDBLite consensus disorder prediction 85 154 - -
Vifa5g00755 478 SMART if4_15 244 466 IPR003890 GO:0003723|GO:0005515
Vifa5g00755 478 MobiDBLite consensus disorder prediction 336 364 - -
Vifa5g00755 478 Coils Coil 326 346 - -
Vifa5g00755 478 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 31 476 IPR045208 GO:0003743
Vifa5g00755 478 FunFam Eukaryotic translation initiation factor 4G 234 478 - -
Vifa5g00755 478 Pfam MIF4G domain 245 465 IPR003890 GO:0003723|GO:0005515
Vifa5g00755 478 SUPERFAMILY ARM repeat 243 468 IPR016024 -
Vifa5g00755 478 Gene3D - 244 477 - -
Vifa5g00755 478 MobiDBLite consensus disorder prediction 103 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00755 Vifa-Chr5 226030483 226031919 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00755 37 476 Eukaryotic Initiation Factors Gene Family AT3G60240 56.067 7.20e-157 484
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00755 K03260 - gmx:100790680 652.514