Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00749 ATGGCAGAAGTGGCAGTGTCATTAGTTATTGATCAACTAGTTCCACTGATAAGGGAAGAAGCTAAGCTGTTGAGAGGTACTGACAAAGAGTTTGCAGATATTAAAGATGAGCTTGAAAGTATTCAAGCTTTCCTTAAGGATGCGGATAAAAGAGCTTCAACAGCTGAAGTAGTCAAAACATGGGTGAAGCAAGTTAGGGAAGCAGCTTTTCGCATTGAAGATATCATTGATGATTATTTGATCCATGTGGGGCAGCAGCCTCCTCATCCTGGATGTCTATTTTTACTCCATAAACTCAAAACTATTATCCCTCGACGCCAAATAGCGTCTGAGATTCAAGACATTAAGTTATATGTTCGTGGGATCAAGGAAAGAAGTGAAAGATATGGCCTCCAATATTCCTTAGAACAACGATCAAGCAATTCTCGGGAAAGACAGGATTCTAAATGGCACGATCCTCGAGTGGCTGCTCTTTACATTGAGGAAGCTGATGTTGTGGGCTATGAACCTCAAAGAGATGGGTTGATTGATTGGTTGGTAAATGGAAGTGATGAGCGCACTGTAGTTTCTGTAGTTGGAATGGGAGGGCAAGGAAAAACTACTCTTGCCAAGAAAGTTTTTGAAAGCAAGAATGTTGTTCGACACTTTGATTGTCGCGTATGGATCACTGTGTCTCAATCATATAGTGTTGAAGGGTTGTTGAGGGATATGTTGCTAAACTTATACAAGCAAAAAGGAGAAGATCCTCCCGACGATACTTTTGAAATGGATCGAGGGTCATTGACGGGTGAGGTGAGAAACTACTTGCAGAAAAAGAGGTACGCTGTCGTCTTTGATGATGTTTGGAGTGAACATTTTTGGGGTGATATTGAATTTTCATTAAGTGATAATAAAAATGGAAGTAGGATATTTATCACAACAAGAAACCTAGATGTTGCGATGTCTTGTAAAAAATCTTCTTTTGTTGAGGTTCTTGAGTTGCAACCGTTAACTCAAGAACAATCTTTCGAGCTGTTCAAAAAGAAGGCATTCAAATTTGACTATGCTGGGTGTTGTCCAAAGGAGCTGAATGATATAGCTTATGAAATTGTTAGAAAATGCAAGGGATTACCACTAGCAATCGTTGCCATTGGTGGTGTTTTGTCTGCAAAAGAGAAAAATGTTTTTGAGTGGCAGAAATTTAATGAAAATCTAAGCTTAGAGCTATTGAAAAGTACACATTTAACTGGGATACAAGAAATTTTAGGCTTAAGTTATGATGATTTGCCTTACCATCTCAAATCATGCTTGTTGTATTTTGGAATATATCCACAAGATTACCAAGTTAAAACAAAGAGAGTAATTCAACAGTGGATAGCTGAAGGATTTGTGAAAGAGGAAAGGGGGAAGACTCTGGAAGAAGTTGCAGAAGGATATTTAACAGACTTGATTCATAGAAGCTTAGTGCAATTATGTTCGGTTAGAATTGATGGTAAAGTTAAGAGTTGTCGTGTTCATGATCTAATACGCGATATGGTCCTAAAAAGAATTGAGGATTTAAACTTTTGCAAGCATATTAGTGAAGACGAAGAATCATCCTTAAGTGGAAGAGTTCGGCGCCTATCAATAACAACCACCTCTGACGATTTCATTGAGCGTACTGAAATATCACATGTTCGGTCAATACTTGTTTTTACAAATAAAGAATCAAATATATACTTTGTGAGGAAATTTCCTACAAAATACGTACGCTTAAAGGTTCTTGATTATAAATGTTCGCGACTGTTGAATGTTCCTAAAGAGCTGGGAAGTATGGTTCACTTGAAGTATTTAAGTCTGGGGTACATAACAGCAGGTAAAATCCCAAACTCCATTGGCATGCTCCAGAGCCTAGAGACCTTGGATCTAAGGGCTGCTAATGTTAATGAGTTGCCAAAAGCGATTAGCAAGCTTAGAAAGCTAAGACACCTTATCGGCTCTGGACTATCTTTGATTCGATTAAAGAATGGTGTCGGAGAGATGACATTGTTACAAACACTATGTTATGTTAATTTAGGTATGGATGGAGCTGTAGAGGTGATTAAAGAGTTAGGAAAGCTGAAGCAGATGAGAGAAATCGGGTTGCTTAATGTTCGTAGAGATGATTACAACGCTCTATCTTCGTCGATCACTGAAATGAAACACTTGGAGAAATTACATGTTAAGCTAAGTTCTACAGCTAGCAATGAATTCATTGATTTGAATTTGATTTCACCGCCGAGTAAGCTTCGAAAACTTACGCTGCGTGGGAGGCTAGAGAAGTTGCCAGAGTGGATTTTAGAGCTTCGAAATGTTGTTGTGTTGAGGTTGAAGCTCTCCTGTTTAACTAAAGATCCAATGGAATCCCTCAACAGTTTGCAACACTTGTTGATTCTCTCTATAGGCGTGGGTGCTTATGGAGGTTCAACTTTGCATTTTCAAGATGGATGGTTTCAGAAACTAAAGGAAATGGATGTTGGATCTTCAAATGAATTGAAAGAGATTATTATCGACAAAGGAGCACTGCCTTCTCTGAAAAAGCTTCAGTTATTCGGACTCCCCAAACTCAAGAATGTACCAACTGGCATCCAACACTTGGACAAGCTTCAAGTTCTCCATTTTCGGAGTATGCAACTTGATTTTTTGCAGCAAAATTCTTCCAAGGATTGGAATTGGCTTATGGAACATGTGCCCCTTGTAGAAATTTCACCACTTGATGGAAACGTTATTCCAAATTCAAGGAGTTAG 2745 0.3865 MAEVAVSLVIDQLVPLIREEAKLLRGTDKEFADIKDELESIQAFLKDADKRASTAEVVKTWVKQVREAAFRIEDIIDDYLIHVGQQPPHPGCLFLLHKLKTIIPRRQIASEIQDIKLYVRGIKERSERYGLQYSLEQRSSNSRERQDSKWHDPRVAALYIEEADVVGYEPQRDGLIDWLVNGSDERTVVSVVGMGGQGKTTLAKKVFESKNVVRHFDCRVWITVSQSYSVEGLLRDMLLNLYKQKGEDPPDDTFEMDRGSLTGEVRNYLQKKRYAVVFDDVWSEHFWGDIEFSLSDNKNGSRIFITTRNLDVAMSCKKSSFVEVLELQPLTQEQSFELFKKKAFKFDYAGCCPKELNDIAYEIVRKCKGLPLAIVAIGGVLSAKEKNVFEWQKFNENLSLELLKSTHLTGIQEILGLSYDDLPYHLKSCLLYFGIYPQDYQVKTKRVIQQWIAEGFVKEERGKTLEEVAEGYLTDLIHRSLVQLCSVRIDGKVKSCRVHDLIRDMVLKRIEDLNFCKHISEDEESSLSGRVRRLSITTTSDDFIERTEISHVRSILVFTNKESNIYFVRKFPTKYVRLKVLDYKCSRLLNVPKELGSMVHLKYLSLGYITAGKIPNSIGMLQSLETLDLRAANVNELPKAISKLRKLRHLIGSGLSLIRLKNGVGEMTLLQTLCYVNLGMDGAVEVIKELGKLKQMREIGLLNVRRDDYNALSSSITEMKHLEKLHVKLSSTASNEFIDLNLISPPSKLRKLTLRGRLEKLPEWILELRNVVVLRLKLSCLTKDPMESLNSLQHLLILSIGVGAYGGSTLHFQDGWFQKLKEMDVGSSNELKEIIIDKGALPSLKKLQLFGLPKLKNVPTGIQHLDKLQVLHFRSMQLDFLQQNSSKDWNWLMEHVPLVEISPLDGNVIPNSRS 914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00749 914 Gene3D - 154 324 IPR027417 -
Vifa5g00749 914 FunFam Probable disease resistance protein At1g61300 149 320 - -
Vifa5g00749 914 SUPERFAMILY L domain-like 497 891 - -
Vifa5g00749 914 PANTHER DISEASE RESISTANCE PROTEIN RP 33 831 IPR044974 GO:0006952
Vifa5g00749 914 CDD RX-CC_like 2 124 IPR038005 -
Vifa5g00749 914 Gene3D - 425 509 IPR036388 -
Vifa5g00749 914 Pfam Rx N-terminal domain 5 87 IPR041118 -
Vifa5g00749 914 Gene3D - 329 423 IPR042197 -
Vifa5g00749 914 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 148 433 IPR027417 -
Vifa5g00749 914 FunFam Probable disease resistance protein At1g63360 419 508 - -
Vifa5g00749 914 Gene3D - 4 112 - -
Vifa5g00749 914 Pfam NB-ARC domain 173 421 IPR002182 GO:0043531
Vifa5g00749 914 Gene3D Ribonuclease Inhibitor 545 899 IPR032675 -
Vifa5g00749 914 PRINTS Disease resistance protein signature 619 635 - -
Vifa5g00749 914 PRINTS Disease resistance protein signature 188 203 - -
Vifa5g00749 914 PRINTS Disease resistance protein signature 367 381 - -
Vifa5g00749 914 PRINTS Disease resistance protein signature 268 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00749 Vifa-Chr5 225025837 225028581 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00749 188 386 WRKY Transcription Factor Family AT5G45050 28.230 3.76e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00749 K13457 - mtr:25489074 976.081