Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00746 ATGAACATTTTTCACAAATTCCCTCTTCTACTAACTCTATTCTTTCTCACATTACAAAAACCAGTTACATCAAAAAACGAATGCACTCACAAATGCGGCAATCTTCACATTCAATTCCCATTCCATCTCAAAAACAACACCAACCACACCAAACACTATCCTCAACACTTCCAATTATCATGCACAGATAAACATCAAACAGTTTTAGAATTTCCCACAATTCCACTCAAGCTTTTCATCAAACACATAGACTACCAAACACAAAAACTCCAAATCTACGACCCAAACAACTGTCTTTCAACTCAGTTATTCAAACTCGGAAACTCGTCCGTTTCGCCTTTCCAGTTTCACTTCCATGAGTTCAATATACAGCGCAACGTTTCGTTCTTTCGCTGTGATTCGAGAAATGGATGTTTGATTAAGCAGCGTGATTCTGGTGCGGATTTTGTTGACCCTGAATTGGTTTCTTGTAGGAAAGTGAGTGATGTTTTGAATGTGGGTTGGATGATTGAGGAATGGGAGGGTGATGATGGTACAGAGAGTTTGATTATGGAGTGGTCTAAACCTAATTGTAGTTTTTGTGAAGTTCAAGGGAAGAAATGTAGATGGAAGAATGGTAATGGAAGTGCTGAAGTTGAATGTTTTGTTTGTTCATCAAATGGGATTGCTAGATCTACTGTTCTTCTAATTACTTCTGGGGTAATAGTTGGTTCCATGATTTTGCTGCTATTGGTAAATGGATTGCTTCGCGTTTATCGCTATTTTAAGATGAAAGAAGATGACATAGCAAGGATAGAGAAGTTCTTAGAGGATTATAGAGCAATGAAACCTACAAGATTCAGTTATGCTGATATTAAAAGAATTACGAATGGTTTTAAGGAGAGTTTAGGAGAAGGAGCTCATGGAGCAGTATTTAAAGGCATGCTCTCCCAAGAAATTTTGGTTGCTGTGAAGGTACTCAATGAAACACAAGGAGATGGAAAAGATTTCATTAATGAAGTTGGAACCATGGGAAAAATTCATCATATCAACGTTGTTCGCTTGCTTGGATTTTGTGCCGATGGATTCCACCGTGCGCTTGTCTACGATTTCTTTCCAAATGGGTCGTTGCAAAATTTCTTGGCACCACCGGAGAACAGGGATGTTTTTCTCGGTTTGGAAAAGTTGCAACAAATTGCTCTTGGTGTTGCAAAAGGGATCGAGTATCTTCACATTGGTTGTGATCATAGAATACTTCACTTTGATATCAATCCACACAATGTGTTATTAGATGATAATCTGAGTCCCAAAATTACTGATTTTGGACTTGCGAAATTGTGTCCGAAAAATCAAAGCACCGTGTCTATGACCGCAGCTAGAGGAACTTTGGGCTATATTGCACCTGAAGTTTTCTCAAGAAACTTTGGAAGCGTGTCTTATAAGTCTGACATTTATAGCTATGGAATGTTGTTGCTTGAGATGGTTGGTGGAAGAAAGAATGCTAATGTGTCTGCGGAGGAAACATTCCAAGTTTTGTATCCGGAATGGATCCATAATCTGATTGAAGGAAAAGATGTACAAGTGAATATTGAGGATGAAGGAGAAGTTAAAATTGCAAAGAAACTTGCGCTCGTAGGACTTTGGTGTATTCAATGGAATCCGGTGGATCGTCCGTCTATGAAAACTGTGGTACAAATGCTTGAAGGGAAAGGAGAAAAATTAATGGTACCCCCTACTCCTTTTGACTCTATTGATGTCAATAGAACAAACGCGGTTATTCCAACCCGACATATGAGTGTTGAGTTAGAAGTTATTCCTGAAATAGAGTAA 1809 0.3858 MNIFHKFPLLLTLFFLTLQKPVTSKNECTHKCGNLHIQFPFHLKNNTNHTKHYPQHFQLSCTDKHQTVLEFPTIPLKLFIKHIDYQTQKLQIYDPNNCLSTQLFKLGNSSVSPFQFHFHEFNIQRNVSFFRCDSRNGCLIKQRDSGADFVDPELVSCRKVSDVLNVGWMIEEWEGDDGTESLIMEWSKPNCSFCEVQGKKCRWKNGNGSAEVECFVCSSNGIARSTVLLITSGVIVGSMILLLLVNGLLRVYRYFKMKEDDIARIEKFLEDYRAMKPTRFSYADIKRITNGFKESLGEGAHGAVFKGMLSQEILVAVKVLNETQGDGKDFINEVGTMGKIHHINVVRLLGFCADGFHRALVYDFFPNGSLQNFLAPPENRDVFLGLEKLQQIALGVAKGIEYLHIGCDHRILHFDINPHNVLLDDNLSPKITDFGLAKLCPKNQSTVSMTAARGTLGYIAPEVFSRNFGSVSYKSDIYSYGMLLLEMVGGRKNANVSAEETFQVLYPEWIHNLIEGKDVQVNIEDEGEVKIAKKLALVGLWCIQWNPVDRPSMKTVVQMLEGKGEKLMVPPTPFDSIDVNRTNAVIPTRHMSVELEVIPEIE 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00746 602 FunFam serine/threonine-protein kinase PBS1-like 258 364 - -
Vifa5g00746 602 ProSiteProfiles Protein kinase domain profile. 290 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g00746 602 SUPERFAMILY Protein kinase-like (PK-like) 272 561 IPR011009 -
Vifa5g00746 602 PANTHER RUST RESISTANCE KINASE LR10-RELATED 261 578 IPR045874 GO:0004672
Vifa5g00746 602 Gene3D Phosphorylase Kinase; domain 1 264 364 - -
Vifa5g00746 602 FunFam PR5-like receptor kinase 365 571 - -
Vifa5g00746 602 Gene3D Transferase(Phosphotransferase) domain 1 365 569 - -
Vifa5g00746 602 Pfam Protein kinase domain 293 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g00746 602 ProSitePatterns Protein kinases ATP-binding region signature. 296 318 IPR017441 GO:0005524
Vifa5g00746 602 Pfam Wall-associated receptor kinase galacturonan-binding 28 94 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00746 Vifa-Chr5 224385008 224387033 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00746 231 573 Receptor kinase-like Gene Family AT1G66910 47.175 1.87e-104 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vifa5g00746 Pkinase 3.8e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00746 - - gmx:100819302 854.744