Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00744 ATGAATGGTGTTTCGAGTAGAACTCGAAGTAAGAATGTTCCGCTCTTCGGTAGTCTTTCACTTCATGGCTCGTGTTCGTTGAAAACTAAGCGTAGAAAAAGTGATATGGATTTGAGCTCTAAAAAAAGGAAGCCAAATAAAGAGCCTTTTGTGTTGCATGGACATGTTGATGTTATTTTCATTGACAGTGACGAGGAAGGAGATCAAGAGTCGTTGAAATATTGTGATAAGAAGTTTTCTGAGTGCTGTCTTGAACAAGTTGATAATGGTGATGCTGGTGAGGTTGGAGATGAGGATTGGTTGAGATATCGTAACAAGAATATTGTTGATGATGGTGGTGAAGGAGGGTTGGAAGATTGTGAAAAAAGTGAAAGCTTTAATGATGAAAAGTATGGTTTGATGTCTGAAAACCCGGTGATAGTTTCAGATGATGATGAATATGATGATAATGAAGAAGATGAATGTGATGAAAGTGAAGAGAGTGAGGAAGTTGAGACTAGTGATGAAGAATTTAAAGTTGATGAGAAAGAAGAGAAGAAAAAGGGTTGGAAGCAGGAGGAGGAGAAAGTGAAGGGAAGGGATTATAAAGGTAGAGCTAACATCCGTAGTGGCGGCGAGAAGAAGGAATCCATGGATACAAAATGTTTGAATCAAAGCAGAGTTTTTATGCCGAAGGAGATGCGTTTAGTGGAGCTCCTTGCTGAATACTATTGGGGAAACAAGAATAATAAAACTCAGAATGATTCATCTGTGTTGGAGATGAAAGATGTTATTCGGCATGATAAACATCCACCACCTGTTTGTAATGGGACAGCTCCATTGATATGGAGCCTTAAGAAGACGGAGAAAGTGCAAAAGACCAAGAGCGAGGAGGAGGAGGAAGCACTATGGGATCAAATGGATGCAACTCTTAGAGAACTAGAAGCCGAATCAACGATGGGAAATTTAGGGAACAATGAAGCTGCTCAGGAAAAGATTGGAAGTCCATTCTCAGACTGTGAACATGACATTCGTCTCGACGAAGAGATTGGTGTATATTGCAGGCGGTGTGGTTGGGTTGTCACTGATAGTAGAGATGTCTCACCACAAGTGGTTGATAGATTTCCTTATGAAGGTTCGAGACACAGGGCTTCATTTGGTGATGCAAATGTCTCACACTTTCATGACTCCCACTTCAATGTTTCTGAACATGACTCCGAGACTAATTTTTCTTACGATGGAAGAACAGCTTGGGACCTAATTCCTGATGTAAAACAAACCTTATATTCTCACCAACAAGAAGGTTTTGAGTTTATTTGGAACAAGTTAGTTGGAAACATCGAGCTTCAAGGGTTAAAGAAAGCCAATCTTCAAAGGGAGGGTGGTTGCATTATTTCACACGCTCCTGGAACTGGAAAGACAAAGCTGACAATAATGTTTCTCAAGGCTTATTTAGAACTTTTTCCGAAATGCTTGCCTGTCATTGTGGCTCCTGCGGGTTTATTGCTTACTTGGGAAGACGAATTCAAAAAATGGGACATAGGTGTTCCATTTCACAATTTGAACAATCTTGAGTTATCTGTTAAAGAGCATGAAGATGTTGTTAATGCAACTAATTGGTCTAATACACCGCGGCATAGTAGGGACGAGACACGAATGGCTAAACTCATTTTGTGGTTCAAAGAAACAAGCATTTTGGGAATCAGTTACAGTTTGTTCAAGGAGCTAGCAGGCAGAGAAGGGGAATCCGAAAATAAGAAAAAAGAAAACAGTTCTATGAGAAAGGCTTTACTAGAAGCTCCTGGTTTGTTGGTTCTAGATGAAGGACATACGCCAAGAAATGCAAGAAGTCGTGTTTGGAAGGTCTTGTCAAATGTTCAAACAAAGAAGAGAATTATGCTTTCTGGAACTCCTTTCCAGAATAATTTCTTGGAATTGTACAACACTTTCAGCATAGTGAAGCCTTCTTTTCCTAACACGATACCGCCCAAGCTGAAAAAGTTTTGCCAAAAACATAAGAAAGCAGCAAACGAATCTGGAAACAGTACAACAGGAAATCCTACTGATGATAAGATCAAGCATTTGAAGTTGCTAATGGATCCCTTTGTTCATGTTTACAAAGGCGCGATTCTTCAAGAGAAGCTTCCCGGGTTAAGAGATTGTGTGCTTCGTTTGAAGCCGGACAGTTTTCAGAAGCAAATTCTTGAGAGCATTCAAAGTTCTCAGGACATTTTAAGCTTTGAGCATAAGCTGATACTGGCATCGATCCATCCGTCTCTATTCCTTAAATGCAAACTTTTGGAAGAAGAAGAATCTGTTGTCGACAAGAAACAGCTTGAAAAACTTAGATTGGATCCATATGTCGGCGTCAAAACAAAATTTTTGGTGGAGCTTGTAAATCTTTGTGTTGCTGTTAATGAAAAAGTTCTTGTGTTTAGCCAATTCATCCCCCCTTTACGCTTAATTGTTGAGCAATTAAACTCAATCTTCAATTGGGCCGAGGGGAAGGAAATACTCTACATGGATGGCATGATTGCTCTGAAGAAAAAGCAGTCTTTAATCCATAACTTCAATGATGCAAACGGCCAAGCTAAGATTCTACTTGCATGTACGAAAGCTTGTTCCGAGGGAATTAGCTTAGTTGGAGCCTCAAGGGTTGTGCTACTTGATGTTATGTGGAATCCTTCGGTCGAACGACAGGCTATCAGTAGAGCATATAGGATTGGACAAGAGAAAGTCGTGTACACGTACCATCTGCTCATGCACGAGACTAGCGATTGTGTCCGATATTTCAAACAGACCGAAAAGGACCGGTTGTCTGAACTAGTATTTTCGGATAATGACAAGGGAAAAAACCATGCGGTGAACTTTGAAGATGGTATACTTGATCGAATGCTTCAGCACGAAAAACTTAAAGACATGTTTGTTGAGTGTGTGGTACAGCCGAATGAAAGAGATTTGGTCGAGAGTTATTATTATTGA 2961 0.4012 MNGVSSRTRSKNVPLFGSLSLHGSCSLKTKRRKSDMDLSSKKRKPNKEPFVLHGHVDVIFIDSDEEGDQESLKYCDKKFSECCLEQVDNGDAGEVGDEDWLRYRNKNIVDDGGEGGLEDCEKSESFNDEKYGLMSENPVIVSDDDEYDDNEEDECDESEESEEVETSDEEFKVDEKEEKKKGWKQEEEKVKGRDYKGRANIRSGGEKKESMDTKCLNQSRVFMPKEMRLVELLAEYYWGNKNNKTQNDSSVLEMKDVIRHDKHPPPVCNGTAPLIWSLKKTEKVQKTKSEEEEEALWDQMDATLRELEAESTMGNLGNNEAAQEKIGSPFSDCEHDIRLDEEIGVYCRRCGWVVTDSRDVSPQVVDRFPYEGSRHRASFGDANVSHFHDSHFNVSEHDSETNFSYDGRTAWDLIPDVKQTLYSHQQEGFEFIWNKLVGNIELQGLKKANLQREGGCIISHAPGTGKTKLTIMFLKAYLELFPKCLPVIVAPAGLLLTWEDEFKKWDIGVPFHNLNNLELSVKEHEDVVNATNWSNTPRHSRDETRMAKLILWFKETSILGISYSLFKELAGREGESENKKKENSSMRKALLEAPGLLVLDEGHTPRNARSRVWKVLSNVQTKKRIMLSGTPFQNNFLELYNTFSIVKPSFPNTIPPKLKKFCQKHKKAANESGNSTTGNPTDDKIKHLKLLMDPFVHVYKGAILQEKLPGLRDCVLRLKPDSFQKQILESIQSSQDILSFEHKLILASIHPSLFLKCKLLEEEESVVDKKQLEKLRLDPYVGVKTKFLVELVNLCVAVNEKVLVFSQFIPPLRLIVEQLNSIFNWAEGKEILYMDGMIALKKKQSLIHNFNDANGQAKILLACTKACSEGISLVGASRVVLLDVMWNPSVERQAISRAYRIGQEKVVYTYHLLMHETSDCVRYFKQTEKDRLSELVFSDNDKGKNHAVNFEDGILDRMLQHEKLKDMFVECVVQPNERDLVESYYY 986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00744 986 Coils Coil 290 310 - -
Vifa5g00744 986 MobiDBLite consensus disorder prediction 27 47 - -
Vifa5g00744 986 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 32 979 IPR044567 GO:0080188
Vifa5g00744 986 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 790 943 IPR001650 -
Vifa5g00744 986 MobiDBLite consensus disorder prediction 172 212 - -
Vifa5g00744 986 Gene3D - 709 978 IPR027417 -
Vifa5g00744 986 Pfam Helicase conserved C-terminal domain 790 902 IPR001650 -
Vifa5g00744 986 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 404 668 IPR027417 -
Vifa5g00744 986 CDD SF2_C_SNF 781 913 - -
Vifa5g00744 986 MobiDBLite consensus disorder prediction 141 212 - -
Vifa5g00744 986 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 447 649 IPR014001 -
Vifa5g00744 986 SMART helicmild6 813 902 IPR001650 -
Vifa5g00744 986 SMART ultradead3 417 661 IPR014001 -
Vifa5g00744 986 MobiDBLite consensus disorder prediction 141 171 - -
Vifa5g00744 986 Gene3D - 390 697 IPR038718 -
Vifa5g00744 986 Coils Coil 173 193 - -
Vifa5g00744 986 MobiDBLite consensus disorder prediction 28 47 - -
Vifa5g00744 986 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 594 941 IPR027417 -
Vifa5g00744 986 Pfam SNF2-related domain 442 738 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00744 Vifa-Chr5 223740738 223744013 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00744 799 954 RAD5 or RAD16-like Gene Family AT5G05130 35.669 1.63e-16 82.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vifa5g00744 SNF2_N 7.1e-18 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00744 K10875 - gmx:100806733 814.298