Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00743 ATGAATGGTGTTTCGAGTAGAACTCGGAGTAAGAATGTTCCGCTCTTCGGTAGTATTCCATTTCATGGGTCATGTGCGTGTTCGTTGAAAACTAAGCGTAGAAAAAGTGATATGGGTTTGAGCTCTAAAAAAAGAAAGACAAATAAAGAGCCTTTTGTGTTGCATGGACATGTTGATGTTATTTTCATTGACAGTGACGAGGAAGGAGATCAAGAGTCGTTGAAATATTGTGATAAGAAATTTTCTGAGGCTAGTGTGGAACAAGTTGATAATGGTGATGTGGATGGGTTGGAGGATTGTGAAAGAAACAACTTTGAGGTTGACGACATTGATGTTAAAAATGAGGAACAAAGTGGAGATATTGTTGATAATGGTGGTCAAGGAGGGTTGGAGGATTGTGAAAAAAACGGTTTAGAGGGTTGTGTTGGTGTTAAGAATGAAGTAGAGAGTGAGGAAAATGGAGGAATGGGTGAGTTAGCTGAAAAAGATGAAATCTTTGACGATGAAAAGCGTGGTTTGATATCTGATGGTGTTTCGAGTCGTACTCGGAGCAAGAATGTTACGCTTTTCGGTAGTATTCCATTTCATGGGTCATGTTCGTGTTCGATGAAATCTAAGCGTAGAAAACGTGATATGGGTTTGAGCTCTAAAAAAAGGAAGCCAAGTGAAGAGCCTTTTGTGTTGCATGAACAAGATAATGTTATTTTTATGGATAGGGATGAGGAAGGAGATGAGAAGTGGTTGAAATCTTCTGATAAGAAATTTTCTGAGGCTTGTCTTGAACAAGTTGATAATGGTGATGATGGTGATTTGGAAGGATTGGAAGATTGTGAAAGAAACAAGTTTGAGGGTAGTGATGGTGATGCTGGTGAAGTTGGAGATGAGGATTGGTTGGGGTATTTGGATAAGAATAAATTTGATGGTGGCGTTGGTGTTAAAAATGAGGAACAAAATGGAGATATTGTTGATAATGTTGGTGAAGGAGGGTTGGAAGATTGTGAAATAAGCCGTTTAGAGGGTTGTGTGGGTGTTGAAAATGAAGTAGAGAGCGAGAAAAATGGAGGAATTGGTGGTGATTTAGTTGAAAAAGATGAGATCTTTGATGATGAAAAGTGTGGGTTGATATCTGATAACATGATTATAGATTCCCATGATGATGGTGATGATGAAGGAGGGTTGAAAGATTGCGAAAATAATAGTGTTGAGGGTTGTGTTGGTGTTGAAAATGAAGTAGAGATCGAGAAAAATGAAGGAATTGGTGACTTAGTTGAAAAAGATGAAAACTTTGACGATAAAAAGTGTGGCTTGACATCTGAAAACCCCATTATAGATTCTGATGATGATGATGATGATGATGAAGATGAATCTGATGATGATGATGATGAATCTGATGATGATGATGATGATGATGGTGATGAAGATGATGAAAGTGAAGAAATAGAGATTAGTGATGAAGAATTTCAAGTTGGTGAGGTGAATGAAGTTTCTGACAGTGATGATAGCAGTTCTTATGCTGTTGATGATGATAATGGTGACGAGAAAGAAGCGAAGAAAAAGGGTTGGGAGGAGAATGAGGAGGAGAAGAACATGGATTGGGAGGAGGAGGTGGTGGCAGAGGAGAAAGAGGTAGTGGACTTGAAAATGGTTTGGCAAGAACATGACAATGGGCTGGAAGAGATGGTGAGAGAGGCCAAGGGTTATTTTGTTCCGAATGATGAATTGGAGCATGCAGACGACGATAATGTAAGAACCTCTAACGTCTTAAAGAAAAAGGGTTCTTTTGTTCCAATGGAGGCTCCTTCTTCTTCTAAATTGCATCAAGCATTAGAGACACCGATGATGAAAGTGAAAAATGTGTCTGGTGATGATGATAATGTATATGTTGGCAAAACCAGGTCCAAGTCCAAATTCAAAGCCAAAGAAAGTGTGATTATTGATGAAGAAAAAATGCAATATGTTCAAGGTTTAGGTGTTGATGATGAAAGTGGTTCTTCTATTCAAACAAAACAGAAGGAGATGAAGAGTTCAGAGAAACAGAAAATCACAGAGATGAAGGGAAGGGATTATAAAAGTAGAGCTAATGCCGGTAGTGGCGAGAAGAAGGAATCCATGGATAAAAATGGTTTGAATCAGAGGGGAAAAAGCACAGTTTTTAGGCCGAAGGAGTTGCGTTTAGTGGAACTCCTTGCTGAATACTATTGGGGAAACAAGAATAATAAAACTCAGAATGATTCACCTGTGTTGGAGATGAAAGATGTTATTCGGCATGATAAACATCCACCACCGATTTGTAACGAGACAGCTCCATTGATATGGAGCCTTAAAAAGGTGGAGAAAGTGCAAAAGACCAAGAACGAGGAGGAGGAGGAAGTACTATGGGATCAAATAGAGACAACCCTTAGAGAACTTGAAGCTGAATCCATGATTGGACATTTGGGGAACAATGAAGCTGCTCAGGAAAAGATTGGAAGTCCATTCTCAGACTGTGAACATGACATCTATCTCGACGAAGAGATTGGTGTATATTGCAGGCGGTGTGGTTGGGTTGTCACTGATATTAAAGATGTCTCACCACAAGTGGTTGATAAATTTCCCTATGAAGGTTCGGGACAAAGGGCTTCGTTTGGTGATGCAAATGTCTCACATTTTCACGACTCGCAGTTCAGTGTTTCTGATCATGACTCGGGGACTACTTTCTCTCACGATGAAAGAACAGTTTGGGACCTAATTCCTGATGTAAAACAGACCTTATATTCTCACCAACAAGAAGGTTTTGAGTTCATTTGGAATAAGTTAGTAGGAAACATCGAGCTTCAAGGGCTAAAGAACGCCAATCTTCAAAGGGAGGGTGGTTGCATTATTTCTCATGCTCCTGGAACTGGAAAGACAAAGCTGACAATAATGTTTCTCAAGGCTTATTTAAAAGTTTTTCCAAAATGCTTGCCGGTCATTGTGGCTCCTGCTGGTTTGTTGCTTACTTGGGAAGACGAATTCAAAAAATGGGACATAGGTGTTCCATTTCACAATTTGAACAATCTTGAGTTATCTGTTAAAGAACATGATGATGTTGTAAATGCAACTAACTGGTCTAATACACGGCGGCATAGTACGGACGAGACACGAATGGCTAAACTGATTTCATGGTTCAAAGAAACGAGCATCCTAGGAATCAGTTACAGTTTGTTCAAGGAGCTAGCAGGTGGAGAAGGTGAATGCAAAGATAAGAAAAAGAAAAAACAGAAGAGAAAAGAAAACAGTTATATGAGAAAGGCTTTGCTTGAAGCTCCTGGTTTGTTGGTTCTAGATGAAGGACATACTCCAAGAAACGCAAGAAGTCGTGTTTGGAAGGTGTTGTCAAAAATTCAAACAAAGAAGCGAATTATGCTTTCTGGAACTCCTTTCCAGAATAATTTCTTGGAATTGTACAACACTTTCAGCATAGTGAAGCCTTCTTTTCCTAACACGATACCGCCCAAGCTGAAAAAGTTTTGCCAGAAACGTAAGAGAGCAGCAACAGAATGGAGTTGGGAACCGGTTACTGGAAACAGTACATCACGAAACCCTTCTAATGATAAGATCAAGCATTTGAAGTTGCTAATGGATCCCTTTGTTCATGTTTACAAAGGCGCTATTCTTCAAAAGAAGCTTCCCGGGTTAAGAGATTGCGTGCTTCGTTTGTGGCCGGGTAGTTTTCAGAAACAAATTCTTGAGTGCATTAAAAGTTCTCAGAACATATTGCACTTTCAGCATAAGCTGATACTGGCATCGGTCCATCCGGCTCTATTCCTCGAATGCAAACTTTTGGAAGAAGAAGAATCTGTTGTCGACAAGGAACAGCTTGAAAAACTTAGATTGGATCCATATGTCGGTGTCAAAACAAAATTTTTGGTGGAGCTTGTAAATCTTTGTGTTGCTGTTAATGAAAAAGTTCTTGTCTTTAGCCAATTCATCCCCCCTTTACGCTTAATTGTTGAGCAATTAAACTCAATCTTCAATTGGGCCGAGGGGAAGGAAATACTCTACATGGATGGCACGACTGATCTGAAGGAAAAGCAGTCTTTAATCCATAACTTCAATGATGCAAACGGCCAAGCTAAGATTCTACTTGCATGTACGAAAGCTTGTTCCGAGGGAATTAGCTTAGTTGGAGCCTCAAGGGTTGTGCTACTTGATGTTGTATGGAATCCTTCTGTCGAGCGACAGGCTATCAGTAGAGCATATAGGATTGGACAAAAGAGAGTTGTGTACACGTACCATCTGCTAACGCACGAGACTTTCGAGTGCGTCAAATATTTTAAACAGGCTGAAAAGGACCGGTTGTCTGAACTAGTATTTTCAGATAATGACAAGGGCAAAAACCGTGCGGTGAACTTTGAAGATGGTATTCTTGATCTAATGCTTCAACACGAAAAACTTAAAGACATGTTTTTTGAGTGTGTGGTACAGCCGAAGGAAAGAGATTTGGTCGAGAGTTATTATTATTGA 4485 0.3973 MNGVSSRTRSKNVPLFGSIPFHGSCACSLKTKRRKSDMGLSSKKRKTNKEPFVLHGHVDVIFIDSDEEGDQESLKYCDKKFSEASVEQVDNGDVDGLEDCERNNFEVDDIDVKNEEQSGDIVDNGGQGGLEDCEKNGLEGCVGVKNEVESEENGGMGELAEKDEIFDDEKRGLISDGVSSRTRSKNVTLFGSIPFHGSCSCSMKSKRRKRDMGLSSKKRKPSEEPFVLHEQDNVIFMDRDEEGDEKWLKSSDKKFSEACLEQVDNGDDGDLEGLEDCERNKFEGSDGDAGEVGDEDWLGYLDKNKFDGGVGVKNEEQNGDIVDNVGEGGLEDCEISRLEGCVGVENEVESEKNGGIGGDLVEKDEIFDDEKCGLISDNMIIDSHDDGDDEGGLKDCENNSVEGCVGVENEVEIEKNEGIGDLVEKDENFDDKKCGLTSENPIIDSDDDDDDDEDESDDDDDESDDDDDDDGDEDDESEEIEISDEEFQVGEVNEVSDSDDSSSYAVDDDNGDEKEAKKKGWEENEEEKNMDWEEEVVAEEKEVVDLKMVWQEHDNGLEEMVREAKGYFVPNDELEHADDDNVRTSNVLKKKGSFVPMEAPSSSKLHQALETPMMKVKNVSGDDDNVYVGKTRSKSKFKAKESVIIDEEKMQYVQGLGVDDESGSSIQTKQKEMKSSEKQKITEMKGRDYKSRANAGSGEKKESMDKNGLNQRGKSTVFRPKELRLVELLAEYYWGNKNNKTQNDSPVLEMKDVIRHDKHPPPICNETAPLIWSLKKVEKVQKTKNEEEEEVLWDQIETTLRELEAESMIGHLGNNEAAQEKIGSPFSDCEHDIYLDEEIGVYCRRCGWVVTDIKDVSPQVVDKFPYEGSGQRASFGDANVSHFHDSQFSVSDHDSGTTFSHDERTVWDLIPDVKQTLYSHQQEGFEFIWNKLVGNIELQGLKNANLQREGGCIISHAPGTGKTKLTIMFLKAYLKVFPKCLPVIVAPAGLLLTWEDEFKKWDIGVPFHNLNNLELSVKEHDDVVNATNWSNTRRHSTDETRMAKLISWFKETSILGISYSLFKELAGGEGECKDKKKKKQKRKENSYMRKALLEAPGLLVLDEGHTPRNARSRVWKVLSKIQTKKRIMLSGTPFQNNFLELYNTFSIVKPSFPNTIPPKLKKFCQKRKRAATEWSWEPVTGNSTSRNPSNDKIKHLKLLMDPFVHVYKGAILQKKLPGLRDCVLRLWPGSFQKQILECIKSSQNILHFQHKLILASVHPALFLECKLLEEEESVVDKEQLEKLRLDPYVGVKTKFLVELVNLCVAVNEKVLVFSQFIPPLRLIVEQLNSIFNWAEGKEILYMDGTTDLKEKQSLIHNFNDANGQAKILLACTKACSEGISLVGASRVVLLDVVWNPSVERQAISRAYRIGQKRVVYTYHLLTHETFECVKYFKQAEKDRLSELVFSDNDKGKNRAVNFEDGILDLMLQHEKLKDMFFECVVQPKERDLVESYYY 1494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00743 1494 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 375 1487 IPR044567 GO:0080188
Vifa5g00743 1494 MobiDBLite consensus disorder prediction 415 434 - -
Vifa5g00743 1494 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 906 1169 IPR027417 -
Vifa5g00743 1494 MobiDBLite consensus disorder prediction 274 288 - -
Vifa5g00743 1494 MobiDBLite consensus disorder prediction 264 294 - -
Vifa5g00743 1494 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1298 1451 IPR001650 -
Vifa5g00743 1494 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 27 - -
Vifa5g00743 1494 MobiDBLite consensus disorder prediction 665 708 - -
Vifa5g00743 1494 MobiDBLite consensus disorder prediction 507 526 - -
Vifa5g00743 1494 Coils Coil 522 542 - -
Vifa5g00743 1494 SMART helicmild6 1321 1410 IPR001650 -
Vifa5g00743 1494 Gene3D - 1217 1486 IPR027417 -
Vifa5g00743 1494 CDD SF2_C_SNF 1289 1421 - -
Vifa5g00743 1494 SMART ultradead3 913 1163 IPR014001 -
Vifa5g00743 1494 Gene3D - 886 1187 IPR038718 -
Vifa5g00743 1494 MobiDBLite consensus disorder prediction 201 226 - -
Vifa5g00743 1494 MobiDBLite consensus disorder prediction 415 533 - -
Vifa5g00743 1494 MobiDBLite consensus disorder prediction 656 716 - -
Vifa5g00743 1494 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 943 1151 IPR014001 -
Vifa5g00743 1494 MobiDBLite consensus disorder prediction 442 493 - -
Vifa5g00743 1494 Pfam Helicase conserved C-terminal domain 1298 1410 IPR001650 -
Vifa5g00743 1494 Pfam SNF2-related domain 939 1233 IPR000330 GO:0005524|GO:0140658
Vifa5g00743 1494 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1096 1449 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00743 Vifa-Chr5 223728332 223733192 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00743 1307 1466 RAD5 or RAD16-like Gene Family AT5G05130 37.267 3.15e-17 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vifa5g00743 SNF2_N 5e-17 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00743 K10875 - gmx:100806733 836.639