Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00729 ATGTTTCCTCTCTTATTCCTACTCCTAAAACTACAAATCTTCCTCATACATGCATCTCAATCTCTCTCTAACACTGAACTCGACACTCTTATTGCCATCAAACACTCTCTAGACCCAGAAAACCATGTGTTATTCTCATGGAATAGTTCTTCTGACCCATGTAGTGGAACTTTTGAAGGTGTTGCTTGTAATGAACAAGGTTTTGTTACTAATATTTCACTTCAAGGAAAAGGTTTATCTGGGAAAATACCTTCGGTTATTGGTAGTCTTAAGAGTTTGACTGGTCTTTACCTTCATTTCAATGCTTTGAATGGGATTTTGCCTAAGGAAATTGCAGGGTTATCTCAGCTTTGTGATTTGTATCTTAATGTTAATAGTCTCTCTGGTACTATCCCTCGTGAGATTGGTAACATGTCAAATCTTCAAGTTTTGCAGCTTTCTTATAACGAGCTTAATGGAAGTATACCGACCGAGCTAGGAAGATTAGAGAAGCTAAGTGTTGTTTCACTCCAATATAATCACTTACGCGGCGCGATTCCTGCGAGTTTGGGTGAGCTAGAGTCACTAGAAAGATTGGATCTCAGCTTCAATACCTTTTTTGGTCCAATTCCAGTAACGTTGTCTTATGCACCTAAACTACAGATTCTTGATGTTCGAAACAATTCACTCTCGGGCAACATCCCTATAGATTTAAAAAGACTAGAAGAAGGGTTCAAGTATTCGAACAATCGTGGTTTATGTGGAACTGGATTTGCCAATTTAGATTCTTGTCAAATAGTATACAATTCAGATCCAATTAGACCTGAACCATATGTACCTACAAAGAATTCTACAATTGATCATCCGACATCGCCTGAACAAACTGCTAAAAACTGCAGCAATGCTGATTGTAGAAGGCACTCAGAATCTTTGATAATTGCTTTGATTTTTGTGATGGTTGGTGTGATTTTTGTGTCTTCTGTTACTGGACTCTTTCTGATCTTACAATACCGTCGTCAGAAACAGAAAATTGGAAACACTGCTGAAATTTCTAATATCCGGCAGCTTAGTACTGACAAGATCAAGGAAGTGTGCAGGAAAGACGCGTCGCGGCTTATAAGTTTGGAGTATTCCCATAGTTGGGATCCGTTATCCAAAGATATCGGTGGTTACTCCCAGGAGTTTCTCCGAAGCTTTATGTTTAATCTCGAAGAAGTAGACCGAGCAACTCAGTGCTTCTCCGAACTAAATATACTGACGAAGAACAATATTTTGGCTAACTATAGAGGAATCTTGAGAGATGGATCTGTTGTGGTTATAAAGTGCATTGCCAAGACAAGCTGTAAGTCTGATGAAACTGAGTTCTTGAAAGGCTTGAAGATATTAACTTCCTTAAAGCACGATAATCTAGTTCGTTTGAGAGGCTTTTGTTGTTCCAAAGGCCGCGGGGAATGTTTTCTGGTTTATGATTTTGTTTCCAACGGGAGTTTGTCCAAGTATCTTGATGTTAAGAGAGGAAGTGATGAGGTACTTGAATGGTCCACTAGAGTTTCCATAATCCATGGTATTGCAAAAGGTATTGGTTATCTACATGGAAAAAATAGAAGGAAGGAATATTCTGTAGTTCATCAGAATATATCAGCCGAAAAAGTACTTCTGGATTCTGGGTATAATTCCTTACTTGCAGATTCAGGATTGCACAAACTTCTCGCAGATGATGTTGTTTTCTCCACCCTCAAAGCTAGTGCTGCAATGGGGTACCTGGCACCAGAATACGCGACAACAGGCCGTTTTACTGAAAAGAGTGACGTGTATGCTTTCGGGGTGATAGTTTTCCAACTAGTCATTGGAAAACATGATATCACGTTACTAAGTCGTCAATGGGAAGAAACTGGTTTTTTGAAAGATATTATCGATGAAAATCTTGAAGGAAAGTTTTTAGAATCCGAGGCAGAGAAATTGGCGAGACTTGCTTCGGTTTGCACCAGTGAATCTCCCCATCTCCGGCCGAGTATGGAGAATATAATGATGGAACTATGTGATGATAAGTGGTAA 2034 0.3928 MFPLLFLLLKLQIFLIHASQSLSNTELDTLIAIKHSLDPENHVLFSWNSSSDPCSGTFEGVACNEQGFVTNISLQGKGLSGKIPSVIGSLKSLTGLYLHFNALNGILPKEIAGLSQLCDLYLNVNSLSGTIPREIGNMSNLQVLQLSYNELNGSIPTELGRLEKLSVVSLQYNHLRGAIPASLGELESLERLDLSFNTFFGPIPVTLSYAPKLQILDVRNNSLSGNIPIDLKRLEEGFKYSNNRGLCGTGFANLDSCQIVYNSDPIRPEPYVPTKNSTIDHPTSPEQTAKNCSNADCRRHSESLIIALIFVMVGVIFVSSVTGLFLILQYRRQKQKIGNTAEISNIRQLSTDKIKEVCRKDASRLISLEYSHSWDPLSKDIGGYSQEFLRSFMFNLEEVDRATQCFSELNILTKNNILANYRGILRDGSVVVIKCIAKTSCKSDETEFLKGLKILTSLKHDNLVRLRGFCCSKGRGECFLVYDFVSNGSLSKYLDVKRGSDEVLEWSTRVSIIHGIAKGIGYLHGKNRRKEYSVVHQNISAEKVLLDSGYNSLLADSGLHKLLADDVVFSTLKASAAMGYLAPEYATTGRFTEKSDVYAFGVIVFQLVIGKHDITLLSRQWEETGFLKDIIDENLEGKFLESEAEKLARLASVCTSESPHLRPSMENIMMELCDDKW 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00729 677 SUPERFAMILY Protein kinase-like (PK-like) 384 670 IPR011009 -
Vifa5g00729 677 Gene3D Phosphorylase Kinase; domain 1 381 484 - -
Vifa5g00729 677 ProSiteProfiles Protein kinase domain profile. 406 677 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g00729 677 Gene3D Transferase(Phosphotransferase) domain 1 485 676 - -
Vifa5g00729 677 SUPERFAMILY L domain-like 24 232 - -
Vifa5g00729 677 Gene3D Ribonuclease Inhibitor 23 264 IPR032675 -
Vifa5g00729 677 FunFam Protein NSP-INTERACTING KINASE 2 377 484 - -
Vifa5g00729 677 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 71 672 - -
Vifa5g00729 677 Pfam Leucine rich repeat N-terminal domain 24 64 IPR013210 -
Vifa5g00729 677 Pfam Protein tyrosine and serine/threonine kinase 429 672 IPR001245 GO:0004672|GO:0006468
Vifa5g00729 677 FunFam Protein NSP-INTERACTING KINASE 2 23 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00729 Vifa-Chr5 205551066 205553776 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00729 7 519 Miscellaneous Gene Families AT4G22730 49.240 6.27e-167 487
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Vifa5g00729 PK_Tyr_Ser-Thr 1.3e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00729 - - var:108327466 861.677