Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00721 ATGCATGTGTGTATTCATACGATAATCATGGTGATACATGGATGGAATTATGATGTGTTCCTTAGTTTTAGAGGTGAAGATACAAGGACAAGTTTCACAGGCTCTCTCTATCATGGCTTACACCAAAAGGGTATCAATGTTTTCATTGATGATGAGAAGCTTAGAAGAGGAGAACAAATATCTCCATCTCTTATTACAGCCATTGAAGAATCTAGGATTTCAATCATTGTGTTTTCTGAAAACTATGCTTCCTCAACTTGGTGTCTTGATGAGCTTGCCATGATTCTTGAGTGTTGGAAAACAAAGGGACAATTGGTTTTTCCAGTTTTCTACTATGTTGACCCTTCTTGGATTAGGCATCAAAGAGGAAGCTTTGGAATTGCAATGGCTAAACATGAAGTCACATTCAAGGGTGATGTTCAAAGGTTGAACAAGTGGAAAAAAGCATTGTTTGATGCAGCTAATTTATCGGGTTGGAGCTTAAAAAATGGCCAGGGGTATGAATATGAGCTTATCCTAAGGATCATTGATGAGGTTTGTAGCAAATTAAATAACACTCTTTTGCATATTTCTGAGCATCCGGTTGGACTAGAAACTCGCATATCCGAAGTAAAATCACTTTTGCAATTTGAAAAGCCTGTTGAAGAGGTTTGTTTCTTTGGAATTCATGGACATGGAGGCATAGGAAAAACAACAATTGCAAGAGCATTATACAACTCAATTGCGAATGAATTTGAAGTGACAAGTTTCCTTACTGATATAAGAGAAAGCTCAACTCAAAGACAAGGCCTAGTTCAACTTCAAGAAACACTTCTGTATGAAACAGTTGGTGAAAAGAACGTTAAGCTAGGAAATGTTTATAAAGGAATTCCAATTATAAAGAAGAGATTATGTTGCAAAAAAGTACTTTTGATTCTTGATGATGTTGACAAATTGGAACAGCTTCAAGCATTAGCAGGAGGCTGCGATTGGTTCGGTTTCGGAAGTGTAATAATCATAACAACAAGAGATAAACAGTTGTTAGCTTCTCATCTAGTTGATAAAACATATGAAGTGAAGAAATTGAATCATGAAGAAGCTTTTGAACTCTTTACATGGAATGCATTCAAGAGAAAAGCAAGTGATAAGGAGTATATGGAGATTTCCAACAATGTTGTGCTTTATGCTGAAGGACTTCCATTGGCTTTGAAAGTAATGGGATCTAATTTGTTTGGTAAAACAGTTGAGGAATGGAAATCTGCATTGGCTAAATATGAAAAGATTCCTAATAAAGAAGTTCAAAATGTACTTAGAGTAACTTTTGATAACTTAGAAGAGAATGAAAAGGAGATTTTCTTGGATATAGCTTGTTTCTTCAAGGGTGAGACTGTTGAATATGTCGAAAAAACACTTCAAGCTTGTGGTTTCTTCCCAAAATTTGGTATCAGTGTACTTACTGATAGATCTCTTGTAAGTATTGATGAATATAACCGATTGAGAATGCATGATTTGATTCAAGACATGGGCAGGGAAGTAGTTAGAGAAGTTTCGCCGTTAGAGCCTGGAAAACGGAGTAGGTTATGGAATCATGAGGATGTTATTGAAGTACTAACCGAAAGTTCGGGGACTTACAGAATTCAAGGCATGATGGTAGATCTCCCTGATCAATATATGGTACATTTGAAAGATGATTCCTTCAAAAAGATGAAAAACCTCAAAATTCTTATAGTTAGAAATGGACAGTTTTATGGAAGCCCTCAACATCTTCCAAACAATTTAAGGATGCTTGATTGGATGGAATATCCTTCATCGTCTTTGCCACCGACTTTTCAGCCAAAGAAACTTGTTGCACTCAACTTGTCGCGCAGTCGCTTTACATTGCAAGAACCATTCAAGCATTTCGATTCATTGACTTCTATGGATTTGAGTCACTGTGAATTCTTAACAAAGCTACCAGACGTTTCAAGTGTACCAAATTTAACGGAACTAAATCTTGACTATTGTACAAATCTAGAAAAAATTGATGACTCTCTTGGATTTCTTGAGAACCTTACCGAGTTAAGGGCTTATGGATGCACAAAACTTAAAGATTTTCCACAAGCTATCAAATTGACATCATTGAAAACTCTAATTCTTAATTGGTGCTCAAGTCTTCAAACTTTTCCAACAATTTTGGCGAAAATGGAAAATCTCATATCTATTTCAATTGAAGGAACTGGTATTGAAGAATTGCCTCCTTCCATTGGAAACCTTGTTGCTCTTGAAGAATTAAGCATGACCTCTTGCTTGCATCTCAAGGAACTTCCTGAAAACATTGATATGTTGCAGAATCTTAGAAACCTTGATATCGAAGGTTGTCCGCAATTGAGAAGCTTCTTGACGAAATTGAGAGAATTAGGAAAATCCACTCTTACATTTGGTAATGTTCAATCATTGAATCTAGAAAACTGTGGTCTTATCGATGAAGATCTTCCCATAGTTTTCAAATGTTTCCCAAATTTGTTGTCATTAGTCCTTTCCGGAAATAATTTTCTTACTCTTCCAAGATGCATACAAGAATATGATTCATTGCAAATGCTTCACTTAGACGACTGCAAAGAACTCCGAGAAATTCCATGCATTCCTCCCAATTCGCGATATATTAATGCAAGAAACTGCAAATCATTGACTGCAGAGTCATCAAACTTGTTACTAAGTCAGGAAACTTTCGAGGCATGTGAGTTACAAATTATGGTTCCGGGAGCAAGAATTCCAGAATGGTTTGATCACATCCGCGAAGGAGAATATATGACCTTTTTGGTGCATGAAAATTTTCCACCAATCATTTTATGTTTTGCTCTTGCAATAGAGAGTGAAATGAAGAAGAGTTTCAGTTGCGAAATCCGATTTTATATAAATGGTGAAGAAGTTTATGAATTGGAAATACCAAGAAGTTTTTCAGAAATGGTGACTGATCATGTATGGCTGTTTGATTTGAGGACTCATCCATCATTCGAGTTTCGCGATCTTGAGTCGTATCTTGTTGAGGATTGGAATCAGATTGAGATTTCTTGTGTGAAGATAAATGAATCACCAAATGTGAATATAAGCTGGTGTGGAGTACATATATGTAGGCAAGAAGCTAACATGGAAGATATCATATTTAAAGATCCTGATGTTGATTTAGATTCAGATCATGAAGCAAAAGATGATGAAGAGATGGAAGCATTTTATGCTATTCTTGATGCAGAGAATAATGATAACAAAGTGGTTTGTGAATCATCCAAGAGAACAAAGCCAAGTGAAGAAACCAAGAAAGTTTTGAAGACACTTCATGATTATCTCACCAAAGATTTTTCAGTTCTTTTAAGGCCTAATGAGTACAACACCATGAAATCCACCTTAGATTACCTCACAAATTTACCTACAGAAGAAAGAGTATCTGTTGAAATAAGATCATTAGTCATAGAAGTTTCAAGACAGTTCACTTGTTGGAGTTATGATTACACAAATGAAAGCAAGAAAATAGAGTCTACAAAAGCAAAATTGTTAAAAAGGGATGAATTAGAAGAGGGTCTTGAAGCTAACAAAAGCCTTTTTAGAGAAGTAAAGTGTTTGGAAAATGAGTTGTTCAATGAGTTGGAATATTTGGAGGAAAGGAAGAAAGAGCTAGAAGAACTAATAAATGGTGTTAGAGCTAATATAACTGCTTCACAAGAAGCCAAGAACATGGTTGCTCATACAAAGAGAGAAATCTTTGAGAAAGCAAAGATTCTAAAAGTTCAAAGAGATGAATTAAAGGAACAAGTGCATTGTTTGAGAGATGAGCATGAATTGGCTAAGAAATCTCAAGCAAATATAAGAGATGAATGGTTAAAGCTAGGTGAAAAGTTTAATAACACTATAAAGAATGAAAAATAA 3879 0.354 MHVCIHTIIMVIHGWNYDVFLSFRGEDTRTSFTGSLYHGLHQKGINVFIDDEKLRRGEQISPSLITAIEESRISIIVFSENYASSTWCLDELAMILECWKTKGQLVFPVFYYVDPSWIRHQRGSFGIAMAKHEVTFKGDVQRLNKWKKALFDAANLSGWSLKNGQGYEYELILRIIDEVCSKLNNTLLHISEHPVGLETRISEVKSLLQFEKPVEEVCFFGIHGHGGIGKTTIARALYNSIANEFEVTSFLTDIRESSTQRQGLVQLQETLLYETVGEKNVKLGNVYKGIPIIKKRLCCKKVLLILDDVDKLEQLQALAGGCDWFGFGSVIIITTRDKQLLASHLVDKTYEVKKLNHEEAFELFTWNAFKRKASDKEYMEISNNVVLYAEGLPLALKVMGSNLFGKTVEEWKSALAKYEKIPNKEVQNVLRVTFDNLEENEKEIFLDIACFFKGETVEYVEKTLQACGFFPKFGISVLTDRSLVSIDEYNRLRMHDLIQDMGREVVREVSPLEPGKRSRLWNHEDVIEVLTESSGTYRIQGMMVDLPDQYMVHLKDDSFKKMKNLKILIVRNGQFYGSPQHLPNNLRMLDWMEYPSSSLPPTFQPKKLVALNLSRSRFTLQEPFKHFDSLTSMDLSHCEFLTKLPDVSSVPNLTELNLDYCTNLEKIDDSLGFLENLTELRAYGCTKLKDFPQAIKLTSLKTLILNWCSSLQTFPTILAKMENLISISIEGTGIEELPPSIGNLVALEELSMTSCLHLKELPENIDMLQNLRNLDIEGCPQLRSFLTKLRELGKSTLTFGNVQSLNLENCGLIDEDLPIVFKCFPNLLSLVLSGNNFLTLPRCIQEYDSLQMLHLDDCKELREIPCIPPNSRYINARNCKSLTAESSNLLLSQETFEACELQIMVPGARIPEWFDHIREGEYMTFLVHENFPPIILCFALAIESEMKKSFSCEIRFYINGEEVYELEIPRSFSEMVTDHVWLFDLRTHPSFEFRDLESYLVEDWNQIEISCVKINESPNVNISWCGVHICRQEANMEDIIFKDPDVDLDSDHEAKDDEEMEAFYAILDAENNDNKVVCESSKRTKPSEETKKVLKTLHDYLTKDFSVLLRPNEYNTMKSTLDYLTNLPTEERVSVEIRSLVIEVSRQFTCWSYDYTNESKKIESTKAKLLKRDELEEGLEANKSLFREVKCLENELFNELEYLEERKKELEELINGVRANITASQEAKNMVAHTKREIFEKAKILKVQRDELKEQVHCLRDEHELAKKSQANIRDEWLKLGEKFNNTIKNEK 1292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00721 1292 Coils Coil 1175 1227 - -
Vifa5g00721 1292 PRINTS Disease resistance protein signature 695 711 - -
Vifa5g00721 1292 PRINTS Disease resistance protein signature 389 403 - -
Vifa5g00721 1292 PRINTS Disease resistance protein signature 219 234 - -
Vifa5g00721 1292 PRINTS Disease resistance protein signature 296 310 - -
Vifa5g00721 1292 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 17 715 IPR044974 GO:0006952
Vifa5g00721 1292 Gene3D Ribonuclease Inhibitor 537 713 IPR032675 -
Vifa5g00721 1292 Gene3D - 12 182 IPR035897 -
Vifa5g00721 1292 SUPERFAMILY "Winged helix" DNA-binding domain 425 530 IPR036390 -
Vifa5g00721 1292 Gene3D - 183 348 IPR027417 -
Vifa5g00721 1292 SUPERFAMILY Toll/Interleukin receptor TIR domain 13 159 IPR035897 -
Vifa5g00721 1292 Gene3D - 354 438 IPR042197 -
Vifa5g00721 1292 Pfam NB-ARC domain 201 424 IPR002182 GO:0043531
Vifa5g00721 1292 SMART till_3 16 156 IPR000157 GO:0007165
Vifa5g00721 1292 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 448 IPR027417 -
Vifa5g00721 1292 ProSiteProfiles TIR domain profile. 15 183 IPR000157 GO:0007165
Vifa5g00721 1292 Gene3D Ribonuclease Inhibitor 714 900 IPR032675 -
Vifa5g00721 1292 FunFam Disease resistance protein (TIR-NBS-LRR class) 13 185 - -
Vifa5g00721 1292 Coils Coil 1235 1269 - -
Vifa5g00721 1292 SUPERFAMILY L domain-like 542 892 - -
Vifa5g00721 1292 Pfam TIR domain 16 187 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00721 Vifa-Chr5 203454096 203458791 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00721 16 792 WRKY Transcription Factor Family AT4G12020 30.979 3.09e-89 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00721 - - psat:127127957 2346.24