Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00716 ATGGGTCTTAGTGCATTCTCTCATACACTCATCCTTCTAGGTTCACTCTCAATATTCATAGTGAACCCTTCCTATGGTTTTAATCCAAGGAAGCTTGTTAATGTAACTTCATACTCCTCACCTGATTCAGATTGGTCACCATCTGTGGCCACTTGGTATGGATCTCCCGACGGCGACGGAAGCGAAGGTGGTGCTTGTGGATATGGAAATGCTGTTGGACAATCTCCATTTTCGTCACTGATATCAGCCGGAAGTCCGGCCATCTATGACTCCGGCAAAGGCTGTGGGTCTTGCTATGAGGTTAGGTGCACAGGAAATTCTGCATGTTCAGGAAACCCTGTGAGAGTAGTTATCACTGATGAGTGTGCTGGTTGTGGCTCAGATGCTCAATATCATTTTGATTTGAGTGGCACTTCTTTTGGCTCCATGGCTATTTCAGGTCTAGATCAAGAGCTACGTAATGCTGGAAAAATAAACATGGAACATAGAAGAGTTGAATGCAACTATGCAGGTAGATCAATAGCTTTCCACGTGGACTCTGGATCAAACCATGAATATTTTGCAACATTGATTGAATATGAGGAAGGAGATGGTGATCTTAACAAGGTTGAAGTGAAGGAAGCACTTGATTCATCTTCTTGGGATGCCATGCAACAATCATGGGGTGCTGTTTGGAAGTTTGATAAAGGGGCACCACTTCATGCACCATTTTCTATTAGGCTAACTACACTTGCATCTGGAAAGAGTATTGTGGCTGAGAATGTGATTCCTGCTGGTTGGAAGCCTGGTCAGACTTATAGATCAATTGTGAATTTTTAA 819 0.4322 MGLSAFSHTLILLGSLSIFIVNPSYGFNPRKLVNVTSYSSPDSDWSPSVATWYGSPDGDGSEGGACGYGNAVGQSPFSSLISAGSPAIYDSGKGCGSCYEVRCTGNSACSGNPVRVVITDECAGCGSDAQYHFDLSGTSFGSMAISGLDQELRNAGKINMEHRRVECNYAGRSIAFHVDSGSNHEYFATLIEYEEGDGDLNKVEVKEALDSSSWDAMQQSWGAVWKFDKGAPLHAPFSIRLTTLASGKSIVAENVIPAGWKPGQTYRSIVNF 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00716 272 Pfam Expansin C-terminal domain 174 257 IPR007117 -
Vifa5g00716 272 PANTHER EXPANSIN-B3 30 272 - -
Vifa5g00716 272 PRINTS Expansin/Lol pI family signature 254 268 IPR007118 GO:0005576
Vifa5g00716 272 PRINTS Expansin/Lol pI family signature 44 59 IPR007118 GO:0005576
Vifa5g00716 272 PRINTS Expansin/Lol pI family signature 62 80 IPR007118 GO:0005576
Vifa5g00716 272 PRINTS Expansin/Lol pI family signature 85 103 IPR007118 GO:0005576
Vifa5g00716 272 PRINTS Expansin/Lol pI family signature 155 171 IPR007118 GO:0005576
Vifa5g00716 272 PRINTS Expansin/Lol pI family signature 214 228 IPR007118 GO:0005576
Vifa5g00716 272 CDD DPBB_EXPB_N 49 167 - -
Vifa5g00716 272 SUPERFAMILY PHL pollen allergen 172 268 IPR036749 -
Vifa5g00716 272 Gene3D - 169 272 IPR036749 -
Vifa5g00716 272 SUPERFAMILY Barwin-like endoglucanases 35 171 IPR036908 -
Vifa5g00716 272 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 63 172 IPR007112 -
Vifa5g00716 272 PRINTS Major pollen allergen Lol pI signature 176 191 IPR005795 GO:0005576|GO:0019953
Vifa5g00716 272 PRINTS Major pollen allergen Lol pI signature 144 159 IPR005795 GO:0005576|GO:0019953
Vifa5g00716 272 PRINTS Major pollen allergen Lol pI signature 103 113 IPR005795 GO:0005576|GO:0019953
Vifa5g00716 272 PRINTS Major pollen allergen Lol pI signature 192 207 IPR005795 GO:0005576|GO:0019953
Vifa5g00716 272 PRINTS Major pollen allergen Lol pI signature 83 94 IPR005795 GO:0005576|GO:0019953
Vifa5g00716 272 PRINTS Major pollen allergen Lol pI signature 223 240 IPR005795 GO:0005576|GO:0019953
Vifa5g00716 272 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 185 268 IPR007117 -
Vifa5g00716 272 Pfam Lytic transglycolase 82 161 IPR009009 -
Vifa5g00716 272 Gene3D - 30 168 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00716 Vifa-Chr5 201346483 201348474 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00716 22 272 Expansin Gene Family AT1G65680 57.371 1.01e-111 321
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00716 - - gmx:548090 459.144