Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00715 ATGGACAAATACAAGTGCAAACTTTGCAATAGAAGCTTCAACAATGGAAGAGCATTGGGTGGTCATATGAGATCTCACATGATGAATCTTCTTGTAACAAAACAAGAAGATTCGTCTCGAATGATTCAACTTAGTTTTGAAGGTGAATCAGCTTCGTCTTCATCTTCGTCATCGGATGACGACGATGAAAAAGGTCTTAGTTATGGTCTTAGAGAGAATCCTAAGAGAAGCATTCGTCTTGTAGATCAAGAGTTCTCTTTTCCACCGGTGGATACAAGTTCGGTGATTCTTCAAGATATAGAAAGCGAAAGTGAATCGTCCAAGAACAATCCGACTCGTAAAAGATCTAAAAGGGTGTGGAAAATCCGTCACTTTGATCAAAAGTATTATGATGAATCTAGTACAAAGAAAGTGAAGTTTTTTAATAAAAATGATTCTTCTTCTATTGTTGATCATGAACCGGGTAGTTCGGTTTCTGATACAACAGAAGAAGATATTGCATTTTGTCTAATGAAATTGTCGAGAGACAAATGGGATAGACAAAATGAACAACTCGTAGAGGAAGAAATATATGATGATGAGGACGATGAAGACGAAGACGACTTTGAAGAAGAAGATGAAAAAGAAGAAATTGATAGATCTTTAGAAGAGAGTGATGAATCTCAAGAGCTAATCAAAGCAAGCAAGAGTAACAACAAAGTACGCAAAGGAAAATACAAATGCGAAACATGTAACAAAGTGTTCAAATCATATCAAGCATTGGGCGGTCACCGAGCGAGTCACAAGAAGATTAAAACAAACATAACACTCGAAGAACCCTCGCCCGAATTCAACATTGTCGAAAAGAAAGTTCATGAATGTCCGGTTTGTTTTCGAGTTTTTAATTCGGGACAAGCCCTTGGTGGACACAAAAGAACACATGTGATGCATGGATCAACAACTTCAACAATAATTCCAATTTTTAGTACAAAAAAAGTTGGAAAAAGTGTTATAGATCTTAACCTTCCTGCACCAATTGATGATGATGAGGTTAGTCAAATTGAGAATTCTGCTGTTTCAGATGCTGAATTTGTCAAAACTCATTAG 1086 0.3656 MDKYKCKLCNRSFNNGRALGGHMRSHMMNLLVTKQEDSSRMIQLSFEGESASSSSSSSDDDDEKGLSYGLRENPKRSIRLVDQEFSFPPVDTSSVILQDIESESESSKNNPTRKRSKRVWKIRHFDQKYYDESSTKKVKFFNKNDSSSIVDHEPGSSVSDTTEEDIAFCLMKLSRDKWDRQNEQLVEEEIYDDEDDEDEDDFEEEDEKEEIDRSLEESDESQELIKASKSNNKVRKGKYKCETCNKVFKSYQALGGHRASHKKIKTNITLEEPSPEFNIVEKKVHECPVCFRVFNSGQALGGHKRTHVMHGSTTSTIIPIFSTKKVGKSVIDLNLPAPIDDDEVSQIENSAVSDAEFVKTH 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00715 361 ProSiteProfiles Zinc finger C2H2 type domain profile. 239 266 IPR013087 -
Vifa5g00715 361 MobiDBLite consensus disorder prediction 45 71 - -
Vifa5g00715 361 Gene3D Classic Zinc Finger 2 65 - -
Vifa5g00715 361 ProSiteProfiles Zinc finger C2H2 type domain profile. 285 312 IPR013087 -
Vifa5g00715 361 MobiDBLite consensus disorder prediction 57 71 - -
Vifa5g00715 361 MobiDBLite consensus disorder prediction 186 217 - -
Vifa5g00715 361 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 26 IPR013087 -
Vifa5g00715 361 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Vifa5g00715 361 ProSitePatterns Zinc finger C2H2 type domain signature. 241 261 IPR013087 -
Vifa5g00715 361 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 360 IPR044303 GO:0006355
Vifa5g00715 361 SUPERFAMILY beta-beta-alpha zinc fingers 281 309 IPR036236 -
Vifa5g00715 361 Pfam C2H2-type zinc finger 239 263 - -
Vifa5g00715 361 Pfam C2H2-type zinc finger 4 27 - -
Vifa5g00715 361 Pfam C2H2-type zinc finger 284 307 - -
Vifa5g00715 361 Gene3D Classic Zinc Finger 236 307 - -
Vifa5g00715 361 ProSitePatterns Zinc finger C2H2 type domain signature. 287 307 IPR013087 -
Vifa5g00715 361 SMART c2h2final6 4 26 IPR013087 -
Vifa5g00715 361 SMART c2h2final6 285 307 IPR013087 -
Vifa5g00715 361 SMART c2h2final6 239 261 IPR013087 -
Vifa5g00715 361 MobiDBLite consensus disorder prediction 186 229 - -
Vifa5g00715 361 SUPERFAMILY beta-beta-alpha zinc fingers 3 261 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00715 Vifa-Chr5 199837082 199838167 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00715 1 347 C2H2 Transcription Factor Family AT3G60580 42.817 4.69e-68 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa5g00715 zf-C2H2_6 1.2e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00715 - - tpra:123890030 549.666