Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00707 ATGAGTTGCTTTTCATGTTTCTCCAACCAAGAAAAGAAAGTACCAAGGAGGCTTAATAACAACAATAACAATAATAATGGAAAGAGGATACAATATCCTCCTACTCAAATATCTCCTAAGAAAGCACCTCAACCTCATCATCAAGGAAATTCTATATCAAATCATGATGATGTTTATAATCATTACCAAAAGGCTAGGACAAGCTCACCAAGAGAACCTAAAATAAATAAAGAGGCTCATAGAGAAAATGGTAGTGGGAACAACATTGCTGCACAATCATTCACATTCAGGGAATTGGCTTCTATCACAAGAAACTTTAGGCAAGAAAATCTAATAGGTGAAGGTGGATTTGGAAGAGTTTATAGAGGAAGACTTGAAAAAACAAACCAGGAAGTAGCTGTGAAGCAACTAGACAGGAATGGACTACAAGGGAATAGAGAGTTTCTTGTTGAAGTTTTGATGCTAAGCCTCTTACACCATCATAATCTAGTGAGTCTAATTGGATATTGTGCTGATGGAGAACAAAGACTATTGGTATATGAGTACATGCCATTAGGATCTCTTGAAGACCATCTACTTGATCTTCCATCAAAACAAAAACCATTAGAATGGAGCAAAAGAATGAAAGTAGCACTGGATGCTGCAAAAGGTTTAGAGTATTTGCATGATAGAGCGAATCCACCCGTGATATACCGCGACTTAAAATCCTCCAACATATTACTAGACAATGATTTTAATGCAAAACTATCTGATTTTGGATTAGCTAAACTTGGACCTACTGGTGACAAGTCTCATGTTTCTTCAAGAGTAATGGGAACTTATGGATACTGTGCACCTGAGTATCAAAGAACTGGTCAACTCACTGTTAAATCAGATATATACAGTTTTGGTGTTGTTTTGCTTGAATTGATTACTGGTAGGAGAACTATTGATAACACAAGACAATTAAAGGAGCAAAATCTTGTTACTTGGGCATATCCGGTATTCAGGGAACCAGCAAGGTATTCAAAATTGGCAGATCCAAAACTTGAAGGAAACTTTCCGATGAGATCGTTACATCAAGCAGTGGCAGTAGCAGCAATGTGTCTAAATGAAGAGCCATCAGTTAGACCACTGATAAGTGATGTTGTAACAGCTCTTAGTTTTCTTAATCCAATGAGTCAAGACCAACAAGTTTTGTCACCAATTGATATGCCATCACCAACACAAGAGAATAGTGCAACCTTGAGTCTTCTTGACGATGACAGTTCCGTCGAACGACAAAGAGCCGTTGATGAAGCCACGGAATGGGGTTGA 1296 0.3789 MSCFSCFSNQEKKVPRRLNNNNNNNNGKRIQYPPTQISPKKAPQPHHQGNSISNHDDVYNHYQKARTSSPREPKINKEAHRENGSGNNIAAQSFTFRELASITRNFRQENLIGEGGFGRVYRGRLEKTNQEVAVKQLDRNGLQGNREFLVEVLMLSLLHHHNLVSLIGYCADGEQRLLVYEYMPLGSLEDHLLDLPSKQKPLEWSKRMKVALDAAKGLEYLHDRANPPVIYRDLKSSNILLDNDFNAKLSDFGLAKLGPTGDKSHVSSRVMGTYGYCAPEYQRTGQLTVKSDIYSFGVVLLELITGRRTIDNTRQLKEQNLVTWAYPVFREPARYSKLADPKLEGNFPMRSLHQAVAVAAMCLNEEPSVRPLISDVVTALSFLNPMSQDQQVLSPIDMPSPTQENSATLSLLDDDSSVERQRAVDEATEWG 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00707 431 MobiDBLite consensus disorder prediction 392 431 - -
Vifa5g00707 431 SMART serkin_6 106 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g00707 431 MobiDBLite consensus disorder prediction 415 431 - -
Vifa5g00707 431 MobiDBLite consensus disorder prediction 14 33 - -
Vifa5g00707 431 Gene3D Phosphorylase Kinase; domain 1 90 182 - -
Vifa5g00707 431 Gene3D Transferase(Phosphotransferase) domain 1 183 397 - -
Vifa5g00707 431 MobiDBLite consensus disorder prediction 392 414 - -
Vifa5g00707 431 ProSitePatterns Serine/Threonine protein kinases active-site signature. 229 241 IPR008271 GO:0004672|GO:0006468
Vifa5g00707 431 MobiDBLite consensus disorder prediction 59 81 - -
Vifa5g00707 431 FunFam Serine/threonine-protein kinase PBS1 77 182 - -
Vifa5g00707 431 ProSitePatterns Protein kinases ATP-binding region signature. 112 135 IPR017441 GO:0005524
Vifa5g00707 431 PANTHER OS07G0668900 PROTEIN 3 390 - -
Vifa5g00707 431 Pfam Protein kinase domain 107 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g00707 431 FunFam Serine/threonine-protein kinase PBS1 183 396 - -
Vifa5g00707 431 SUPERFAMILY Protein kinase-like (PK-like) 92 409 IPR011009 -
Vifa5g00707 431 MobiDBLite consensus disorder prediction 41 58 - -
Vifa5g00707 431 ProSiteProfiles Protein kinase domain profile. 106 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g00707 431 CDD STKc_IRAK 112 380 - -
Vifa5g00707 431 MobiDBLite consensus disorder prediction 14 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00707 Vifa-Chr5 198098690 198101089 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00707 1 431 Glycoside Hydrolase AT3G07070 62.587 0.0 530
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Vifa5g00707 Pkinase 2.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00707 - - psat:127127708 743.421