Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa5g00698 | ATGAAGCCAAGTTTGGGTCAGGCTCAGAGTAATTGGGAAGCTGATAAAATGCTTGATGTTTATATTCATGATTATTTTCTGAAAAGGAAGTTACATGCTACTGCGAAAACTTTTATGACAGAAGGGAAAGTTTCCACCGATCCAGTAGCAATTGATGCACCTGGCGGATTTCTTTTCGAGTGGTGGTCGGTCTTTTGGGATATATTCATCTCTAGGACAAATGAGAAACATTCGGAGGCTGCTGTATCTTACATTGAGACCCAGCAAACAAAGGCCAGAGAACAACTTCAAATGCAGCAATTGCAACTAATGCAGCAGCGCAACCAGTTGCAACGAAGAGATCCTAATCATCCTGCACTCGGTGGTTCCTTAAACGCCATGAACCCTGAAGGTATGTTGGGGCAACCACCAGCTAGTGTGTTGGCCATGAAAATGTATGAAGAGCGAATGAAGCACCCTCATTCAATGGATTCAGAGGCATCTCCAGCTCTTATTGATGCAAACAGGATGGCTCTTCTCAAATCAGCAACAAGTCATCAAGGTCAGTTGGTTCATGGTAATTCAGGGAATATGTCCACGGCATTGCAGCAAATGCAGGATATCAAAGGAGAAGTTAACATCGGCGCCAGTCCAAAGAATTTGCCTATGGATTCATCAGTTTATCGACAAGCAATTTTACAATCAAAATCTGGGTTAGGCAGTGCAGGATTAAATCAAGGAGTTACAGGTCTTCCTTTGAAGGGATGGCCTCTAACTGGAATTGATCAACTAAGACCTGGTTTGGGTGTACAAGTTCAGAAGCCTAATTTGACACCACAAAACCAATATCTTTTGGCATCACAACAACAACAGGTCTTGGCACAGGCTCAGGCACAAAACAACCTTGGAAATTCTAATTATGGTGATATGGATCCACGTAGACTTTCTGGTCTTCCTCGAGGTAGCTTAAATGCAAAGGATGGTCAGTCTAACAGGAATGATGGATCTATATGCTCCCAAATGCAAGCAGGTTCACCTAAGATGAAGATGACCCAGTCCCAACAATCATTATCTCAGCAGCAGGAGCAATTGCAGCAGCAGCATCAATTGCAACAGAGCAACAGAAAACGAAAGCAAGCTTCTTCTTCTGGAGCTGCCAATAGCACTGGTACTGGAAACACTGCTGGTCCTTCACCTAATTCGCCGTCATCAACACACACACCTGGTGATGGGTTAAATACAGCTAGCAGCTTGCAGAATGTTAACGGTGTGCAAAAGAGCATGATGATGTATGGTACAGACGCAACAGGAGGCCTGGCATCATCTTCAAATTTACTGGATGATATAGAACGATTTGGAGATGTTGGTGCTTTAGATGATAATGTGGAATCCTTTCTATCGAATGACGGAGGAGATGGTGGCAATCTCTATGGGGCTATAAAACAAAGTCCGGCTGAGCAACAAAAAGAATCTTCAAAAGGTTTCACCTTTGCTGAATTTGGTTGCATAAGAACAAGGAACACAGTTACTTGCTGTCACTTTTCGTCTGATGGAAAGTTGCTAGCCAGTGCTGGGGATGACAAGAAGGTTGTCCTATGGAATATGGACACTTTACGGACAGAGAGCACTCCTGAAGAACACAAATTGGTTATTACAGATGTTCGTTTTAGACCAAATTCATCTCAGTTGGCGACTGCCTCATGTGACAAATCTGTGCGGTTATGGGACGCAGCCAATCCAACCTATTGTGTTCAAGAATATAGTGGACACAGTTCAGCTATTATGTCCCTTGATTTTCACCCTAAGAAGACTGATATTTTCTGCTTCTGCGATACAGAAAATGAAATCCGGTATTGGAACATTACTTCATCCTCTTGTACTCGTGTATCTAAGGGAGGTAGTGCAAAAGTGAGGTTTCAGCCTCGATTAGGACAGTTACTTGCAGCAGCTTCTGATAAAGTGGTGTCTATTTTTGACGTCGAAACTGACAGACCAATTTACACACTCCAGGGTCATCCTGAACCGATAAACAATATTTGCTGGGATGCTACTGGAGATATGTTAGCATCCGTTAGTCCAAATTCGGTGAAGATCTGGAATTTGACATCAGGAGATTGCGTTCAGGAGCTCAACTCCACCGGGAACCAGTTTTATTCCAGTGTTTTTCATCCAAGCTATTCAACTTTATTAGTAGTCGGAGGGTTTTCGTCCATAGAATTGTGGAACATGGCCGAGAACAAGAGCATGACAATTTCTGCACATGAAAATGTGATTTCTGCACTGGCTCAGTCTCCTGTCACTGGAATGGTTGCCTCTGCGAGTCGCGACAACGCCGTAAAGTTGTGGAAATAA | 2331 | 0.4333 | MKPSLGQAQSNWEADKMLDVYIHDYFLKRKLHATAKTFMTEGKVSTDPVAIDAPGGFLFEWWSVFWDIFISRTNEKHSEAAVSYIETQQTKAREQLQMQQLQLMQQRNQLQRRDPNHPALGGSLNAMNPEGMLGQPPASVLAMKMYEERMKHPHSMDSEASPALIDANRMALLKSATSHQGQLVHGNSGNMSTALQQMQDIKGEVNIGASPKNLPMDSSVYRQAILQSKSGLGSAGLNQGVTGLPLKGWPLTGIDQLRPGLGVQVQKPNLTPQNQYLLASQQQQVLAQAQAQNNLGNSNYGDMDPRRLSGLPRGSLNAKDGQSNRNDGSICSQMQAGSPKMKMTQSQQSLSQQQEQLQQQHQLQQSNRKRKQASSSGAANSTGTGNTAGPSPNSPSSTHTPGDGLNTASSLQNVNGVQKSMMMYGTDATGGLASSSNLLDDIERFGDVGALDDNVESFLSNDGGDGGNLYGAIKQSPAEQQKESSKGFTFAEFGCIRTRNTVTCCHFSSDGKLLASAGDDKKVVLWNMDTLRTESTPEEHKLVITDVRFRPNSSQLATASCDKSVRLWDAANPTYCVQEYSGHSSAIMSLDFHPKKTDIFCFCDTENEIRYWNITSSSCTRVSKGGSAKVRFQPRLGQLLAAASDKVVSIFDVETDRPIYTLQGHPEPINNICWDATGDMLASVSPNSVKIWNLTSGDCVQELNSTGNQFYSSVFHPSYSTLLVVGGFSSIELWNMAENKSMTISAHENVISALAQSPVTGMVASASRDNAVKLWK | 776 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa5g00698 | 776 | MobiDBLite | consensus disorder prediction | 295 | 410 | - | - | |
Vifa5g00698 | 776 | Coils | Coil | 93 | 113 | - | - | |
Vifa5g00698 | 776 | ProSiteProfiles | LIS1 homology (LisH) motif profile. | 14 | 46 | IPR006594 | GO:0005515 | |
Vifa5g00698 | 776 | SMART | WD40_4 | 616 | 652 | IPR001680 | GO:0005515 | |
Vifa5g00698 | 776 | SMART | WD40_4 | 737 | 776 | IPR001680 | GO:0005515 | |
Vifa5g00698 | 776 | SMART | WD40_4 | 530 | 569 | IPR001680 | GO:0005515 | |
Vifa5g00698 | 776 | SMART | WD40_4 | 492 | 527 | IPR001680 | GO:0005515 | |
Vifa5g00698 | 776 | SMART | WD40_4 | 696 | 735 | IPR001680 | GO:0005515 | |
Vifa5g00698 | 776 | SMART | WD40_4 | 655 | 693 | IPR001680 | GO:0005515 | |
Vifa5g00698 | 776 | SMART | WD40_4 | 573 | 613 | IPR001680 | GO:0005515 | |
Vifa5g00698 | 776 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 537 | 569 | - | - | |
Vifa5g00698 | 776 | Gene3D | - | 630 | 776 | IPR015943 | GO:0005515 | |
Vifa5g00698 | 776 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 744 | 776 | IPR001680 | GO:0005515 | |
Vifa5g00698 | 776 | PANTHER | TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 | 12 | 776 | IPR044716 | GO:0003714 | |
Vifa5g00698 | 776 | SMART | Lish | 14 | 46 | IPR006594 | GO:0005515 | |
Vifa5g00698 | 776 | PRINTS | G protein beta WD-40 repeat signature | 763 | 776 | IPR020472 | - | |
Vifa5g00698 | 776 | PRINTS | G protein beta WD-40 repeat signature | 556 | 570 | IPR020472 | - | |
Vifa5g00698 | 776 | PRINTS | G protein beta WD-40 repeat signature | 514 | 528 | IPR020472 | - | |
Vifa5g00698 | 776 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 744 | 776 | - | - | |
Vifa5g00698 | 776 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 514 | 528 | IPR019775 | - | |
Vifa5g00698 | 776 | CDD | WD40 | 502 | 776 | - | - | |
Vifa5g00698 | 776 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 662 | 702 | IPR001680 | GO:0005515 | |
Vifa5g00698 | 776 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 580 | 622 | IPR001680 | GO:0005515 | |
Vifa5g00698 | 776 | Gene3D | - | 473 | 629 | IPR015943 | GO:0005515 | |
Vifa5g00698 | 776 | SUPERFAMILY | WD40 repeat-like | 499 | 776 | IPR036322 | GO:0005515 | |
Vifa5g00698 | 776 | MobiDBLite | consensus disorder prediction | 316 | 410 | - | - | |
Vifa5g00698 | 776 | Coils | Coil | 340 | 360 | - | - | |
Vifa5g00698 | 776 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 537 | 569 | IPR001680 | GO:0005515 | |
Vifa5g00698 | 776 | Pfam | LisH | 16 | 42 | IPR006594 | GO:0005515 | |
Vifa5g00698 | 776 | Pfam | WD domain, G-beta repeat | 658 | 693 | IPR001680 | GO:0005515 | |
Vifa5g00698 | 776 | Pfam | WD domain, G-beta repeat | 537 | 569 | IPR001680 | GO:0005515 | |
Vifa5g00698 | 776 | Pfam | WD domain, G-beta repeat | 741 | 776 | IPR001680 | GO:0005515 | |
Vifa5g00698 | 776 | Pfam | WD domain, G-beta repeat | 500 | 527 | IPR001680 | GO:0005515 | |
Vifa5g00698 | 776 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 500 | 536 | IPR001680 | GO:0005515 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa5g00698 | Vifa-Chr5 | 191023322 | 191029488 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa5g00698 | 575 | 775 | Miscellaneous Gene Families | AT5G08390 | 22.816 | 1.09e-11 | 66.6 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | LUG | Vifa5g00698 | WD40 | 0.041 | CL0186 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa5g00698 | - | - | gmx:100799686 | 1190.25 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vifa5g00698 | 5 | 191023322 | 191029488 | Vifa5g00698 | 5 | 191023322 | 191029488 | ECH |