Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00698 ATGAAGCCAAGTTTGGGTCAGGCTCAGAGTAATTGGGAAGCTGATAAAATGCTTGATGTTTATATTCATGATTATTTTCTGAAAAGGAAGTTACATGCTACTGCGAAAACTTTTATGACAGAAGGGAAAGTTTCCACCGATCCAGTAGCAATTGATGCACCTGGCGGATTTCTTTTCGAGTGGTGGTCGGTCTTTTGGGATATATTCATCTCTAGGACAAATGAGAAACATTCGGAGGCTGCTGTATCTTACATTGAGACCCAGCAAACAAAGGCCAGAGAACAACTTCAAATGCAGCAATTGCAACTAATGCAGCAGCGCAACCAGTTGCAACGAAGAGATCCTAATCATCCTGCACTCGGTGGTTCCTTAAACGCCATGAACCCTGAAGGTATGTTGGGGCAACCACCAGCTAGTGTGTTGGCCATGAAAATGTATGAAGAGCGAATGAAGCACCCTCATTCAATGGATTCAGAGGCATCTCCAGCTCTTATTGATGCAAACAGGATGGCTCTTCTCAAATCAGCAACAAGTCATCAAGGTCAGTTGGTTCATGGTAATTCAGGGAATATGTCCACGGCATTGCAGCAAATGCAGGATATCAAAGGAGAAGTTAACATCGGCGCCAGTCCAAAGAATTTGCCTATGGATTCATCAGTTTATCGACAAGCAATTTTACAATCAAAATCTGGGTTAGGCAGTGCAGGATTAAATCAAGGAGTTACAGGTCTTCCTTTGAAGGGATGGCCTCTAACTGGAATTGATCAACTAAGACCTGGTTTGGGTGTACAAGTTCAGAAGCCTAATTTGACACCACAAAACCAATATCTTTTGGCATCACAACAACAACAGGTCTTGGCACAGGCTCAGGCACAAAACAACCTTGGAAATTCTAATTATGGTGATATGGATCCACGTAGACTTTCTGGTCTTCCTCGAGGTAGCTTAAATGCAAAGGATGGTCAGTCTAACAGGAATGATGGATCTATATGCTCCCAAATGCAAGCAGGTTCACCTAAGATGAAGATGACCCAGTCCCAACAATCATTATCTCAGCAGCAGGAGCAATTGCAGCAGCAGCATCAATTGCAACAGAGCAACAGAAAACGAAAGCAAGCTTCTTCTTCTGGAGCTGCCAATAGCACTGGTACTGGAAACACTGCTGGTCCTTCACCTAATTCGCCGTCATCAACACACACACCTGGTGATGGGTTAAATACAGCTAGCAGCTTGCAGAATGTTAACGGTGTGCAAAAGAGCATGATGATGTATGGTACAGACGCAACAGGAGGCCTGGCATCATCTTCAAATTTACTGGATGATATAGAACGATTTGGAGATGTTGGTGCTTTAGATGATAATGTGGAATCCTTTCTATCGAATGACGGAGGAGATGGTGGCAATCTCTATGGGGCTATAAAACAAAGTCCGGCTGAGCAACAAAAAGAATCTTCAAAAGGTTTCACCTTTGCTGAATTTGGTTGCATAAGAACAAGGAACACAGTTACTTGCTGTCACTTTTCGTCTGATGGAAAGTTGCTAGCCAGTGCTGGGGATGACAAGAAGGTTGTCCTATGGAATATGGACACTTTACGGACAGAGAGCACTCCTGAAGAACACAAATTGGTTATTACAGATGTTCGTTTTAGACCAAATTCATCTCAGTTGGCGACTGCCTCATGTGACAAATCTGTGCGGTTATGGGACGCAGCCAATCCAACCTATTGTGTTCAAGAATATAGTGGACACAGTTCAGCTATTATGTCCCTTGATTTTCACCCTAAGAAGACTGATATTTTCTGCTTCTGCGATACAGAAAATGAAATCCGGTATTGGAACATTACTTCATCCTCTTGTACTCGTGTATCTAAGGGAGGTAGTGCAAAAGTGAGGTTTCAGCCTCGATTAGGACAGTTACTTGCAGCAGCTTCTGATAAAGTGGTGTCTATTTTTGACGTCGAAACTGACAGACCAATTTACACACTCCAGGGTCATCCTGAACCGATAAACAATATTTGCTGGGATGCTACTGGAGATATGTTAGCATCCGTTAGTCCAAATTCGGTGAAGATCTGGAATTTGACATCAGGAGATTGCGTTCAGGAGCTCAACTCCACCGGGAACCAGTTTTATTCCAGTGTTTTTCATCCAAGCTATTCAACTTTATTAGTAGTCGGAGGGTTTTCGTCCATAGAATTGTGGAACATGGCCGAGAACAAGAGCATGACAATTTCTGCACATGAAAATGTGATTTCTGCACTGGCTCAGTCTCCTGTCACTGGAATGGTTGCCTCTGCGAGTCGCGACAACGCCGTAAAGTTGTGGAAATAA 2331 0.4333 MKPSLGQAQSNWEADKMLDVYIHDYFLKRKLHATAKTFMTEGKVSTDPVAIDAPGGFLFEWWSVFWDIFISRTNEKHSEAAVSYIETQQTKAREQLQMQQLQLMQQRNQLQRRDPNHPALGGSLNAMNPEGMLGQPPASVLAMKMYEERMKHPHSMDSEASPALIDANRMALLKSATSHQGQLVHGNSGNMSTALQQMQDIKGEVNIGASPKNLPMDSSVYRQAILQSKSGLGSAGLNQGVTGLPLKGWPLTGIDQLRPGLGVQVQKPNLTPQNQYLLASQQQQVLAQAQAQNNLGNSNYGDMDPRRLSGLPRGSLNAKDGQSNRNDGSICSQMQAGSPKMKMTQSQQSLSQQQEQLQQQHQLQQSNRKRKQASSSGAANSTGTGNTAGPSPNSPSSTHTPGDGLNTASSLQNVNGVQKSMMMYGTDATGGLASSSNLLDDIERFGDVGALDDNVESFLSNDGGDGGNLYGAIKQSPAEQQKESSKGFTFAEFGCIRTRNTVTCCHFSSDGKLLASAGDDKKVVLWNMDTLRTESTPEEHKLVITDVRFRPNSSQLATASCDKSVRLWDAANPTYCVQEYSGHSSAIMSLDFHPKKTDIFCFCDTENEIRYWNITSSSCTRVSKGGSAKVRFQPRLGQLLAAASDKVVSIFDVETDRPIYTLQGHPEPINNICWDATGDMLASVSPNSVKIWNLTSGDCVQELNSTGNQFYSSVFHPSYSTLLVVGGFSSIELWNMAENKSMTISAHENVISALAQSPVTGMVASASRDNAVKLWK 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00698 776 MobiDBLite consensus disorder prediction 295 410 - -
Vifa5g00698 776 Coils Coil 93 113 - -
Vifa5g00698 776 ProSiteProfiles LIS1 homology (LisH) motif profile. 14 46 IPR006594 GO:0005515
Vifa5g00698 776 SMART WD40_4 616 652 IPR001680 GO:0005515
Vifa5g00698 776 SMART WD40_4 737 776 IPR001680 GO:0005515
Vifa5g00698 776 SMART WD40_4 530 569 IPR001680 GO:0005515
Vifa5g00698 776 SMART WD40_4 492 527 IPR001680 GO:0005515
Vifa5g00698 776 SMART WD40_4 696 735 IPR001680 GO:0005515
Vifa5g00698 776 SMART WD40_4 655 693 IPR001680 GO:0005515
Vifa5g00698 776 SMART WD40_4 573 613 IPR001680 GO:0005515
Vifa5g00698 776 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 537 569 - -
Vifa5g00698 776 Gene3D - 630 776 IPR015943 GO:0005515
Vifa5g00698 776 ProSiteProfiles Trp-Asp (WD) repeats profile. 744 776 IPR001680 GO:0005515
Vifa5g00698 776 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 12 776 IPR044716 GO:0003714
Vifa5g00698 776 SMART Lish 14 46 IPR006594 GO:0005515
Vifa5g00698 776 PRINTS G protein beta WD-40 repeat signature 763 776 IPR020472 -
Vifa5g00698 776 PRINTS G protein beta WD-40 repeat signature 556 570 IPR020472 -
Vifa5g00698 776 PRINTS G protein beta WD-40 repeat signature 514 528 IPR020472 -
Vifa5g00698 776 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 744 776 - -
Vifa5g00698 776 ProSitePatterns Trp-Asp (WD) repeats signature. 514 528 IPR019775 -
Vifa5g00698 776 CDD WD40 502 776 - -
Vifa5g00698 776 ProSiteProfiles Trp-Asp (WD) repeats profile. 662 702 IPR001680 GO:0005515
Vifa5g00698 776 ProSiteProfiles Trp-Asp (WD) repeats profile. 580 622 IPR001680 GO:0005515
Vifa5g00698 776 Gene3D - 473 629 IPR015943 GO:0005515
Vifa5g00698 776 SUPERFAMILY WD40 repeat-like 499 776 IPR036322 GO:0005515
Vifa5g00698 776 MobiDBLite consensus disorder prediction 316 410 - -
Vifa5g00698 776 Coils Coil 340 360 - -
Vifa5g00698 776 ProSiteProfiles Trp-Asp (WD) repeats profile. 537 569 IPR001680 GO:0005515
Vifa5g00698 776 Pfam LisH 16 42 IPR006594 GO:0005515
Vifa5g00698 776 Pfam WD domain, G-beta repeat 658 693 IPR001680 GO:0005515
Vifa5g00698 776 Pfam WD domain, G-beta repeat 537 569 IPR001680 GO:0005515
Vifa5g00698 776 Pfam WD domain, G-beta repeat 741 776 IPR001680 GO:0005515
Vifa5g00698 776 Pfam WD domain, G-beta repeat 500 527 IPR001680 GO:0005515
Vifa5g00698 776 ProSiteProfiles Trp-Asp (WD) repeats profile. 500 536 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00698 Vifa-Chr5 191023322 191029488 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00698 575 775 Miscellaneous Gene Families AT5G08390 22.816 1.09e-11 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Vifa5g00698 WD40 0.041 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00698 - - gmx:100799686 1190.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g00698 5 191023322 191029488 Vifa5g00698 5 191023322 191029488 ECH