Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00697 ATGGACAATACCGCTTTCAAAAATCCCAACTTTTCCGACGAAGAAGATGAAGAAGTTCCTGATTCCTTTTCTTGTTGCGTTTGTTTGGATCTATTATACAAGCCCATTGTACTATCTTGTGGTCACATATGCTGTTTCTGGTGTGTGTATAAGTCGATGAATTGTTTGCGCGAGTCTCAGTGTCCTACATGTAGGCATCAATACTATCACTTCCCAACAGTTTGTCAAGCGCTTCATTTTTTGCTTCTTAAGATGTATCCCGTTGCTTACAATAGAAGGATCAATCAAACTCTTGAGGAAGAGAGGAAATCAGGCTTCTATTCACCTCAATTTGATCCAGACACATGTGAATCACAAGCTAAATTTGGTCATTCATGTAGCCCTTCTTCCTCCTCAATGATAAATCCGGTGCCCAACTCATGTGTTGTGGAAACTTTTGAATGTACAAAGCAACCAGAGTCCATTGCCCATGAAGCAGAGCCGGAAGTTACTGAGACTCCGGCTGAAGAAAAAACAGTGCCTCATGATAAGCTTGACATACAACATAAAATATCAGTTGCTGATGTTATGTGTACAATGTGCAAGCAACTTCTTTTTCGTCCTGTAGTTCTGAACTGTGGTCACGTATACTGTGAAACTTGTGTCTACAAGTTAGCTGATGATATGCTTAGATGTGGAGTTTGTCAAAGTCCACATCCAAGAGGATTTCCGAAAGTGTGTTTGGAGTTTAATCACTTTTTGGAGGAGCAATTTGCTGAAGAATATGCACGGAGAAGTGATGCTACTGAACTAAAGGATATCAAAGTCAAACCTGAGACCCCTTCTTGTTCATTGGATAACGGTAACAAAGGAGAAAGTACAGAATGGTGGTCTGATCCTGACTTGAAAGTTCATATTGGAGTTGGTTGTGACTTTTGCGGGATGTTTCCTATCATTGGAGATAGATATAGATGCACTGATTGCAAGGAGAAAATGGGTTTTGATCTTTGTAAAGATTGCTACGACACCCGCTCCAAACTTCCAGGCCGATTTAATCAACAACACACCTCAGATCATAATTTCAAGCTTGTACAACCCAATTATATTCGCAACATAATGCTGAGGCTGGTCACAGGACAGTTAGGCGACAGGTCTATCGACGCTGAGTCTTTGAGTAACATAGACTTTACAGCCGAAGCCTCTGGCTTGTTTGACGATGGTGAAGATAACCAGAATGACCCTGAAGCTACCAATTGA 1236 0.411 MDNTAFKNPNFSDEEDEEVPDSFSCCVCLDLLYKPIVLSCGHICCFWCVYKSMNCLRESQCPTCRHQYYHFPTVCQALHFLLLKMYPVAYNRRINQTLEEERKSGFYSPQFDPDTCESQAKFGHSCSPSSSSMINPVPNSCVVETFECTKQPESIAHEAEPEVTETPAEEKTVPHDKLDIQHKISVADVMCTMCKQLLFRPVVLNCGHVYCETCVYKLADDMLRCGVCQSPHPRGFPKVCLEFNHFLEEQFAEEYARRSDATELKDIKVKPETPSCSLDNGNKGESTEWWSDPDLKVHIGVGCDFCGMFPIIGDRYRCTDCKEKMGFDLCKDCYDTRSKLPGRFNQQHTSDHNFKLVQPNYIRNIMLRLVTGQLGDRSIDAESLSNIDFTAEASGLFDDGEDNQNDPEATN 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00697 411 FunFam E3 ubiquitin-protein ligase PRT1 16 111 - -
Vifa5g00697 411 Pfam Zinc finger, ZZ type 299 338 IPR000433 GO:0008270
Vifa5g00697 411 ProSiteProfiles Zinc finger RING-type profile. 191 229 IPR001841 -
Vifa5g00697 411 SMART ring_2 25 64 IPR001841 -
Vifa5g00697 411 SMART ring_2 191 228 IPR001841 -
Vifa5g00697 411 Gene3D - 293 357 IPR043145 -
Vifa5g00697 411 SUPERFAMILY RING/U-box 17 76 - -
Vifa5g00697 411 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 93 IPR013083 -
Vifa5g00697 411 FunFam E3 ubiquitin-protein ligase PRT1 178 273 - -
Vifa5g00697 411 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 178 274 IPR013083 -
Vifa5g00697 411 PANTHER UNCHARACTERIZED 13 375 - -
Vifa5g00697 411 ProSitePatterns Zinc finger RING-type signature. 206 215 IPR017907 -
Vifa5g00697 411 SUPERFAMILY RING/U-box 186 232 - -
Vifa5g00697 411 Pfam RING-type zinc-finger 191 218 IPR027370 -
Vifa5g00697 411 SUPERFAMILY RING/U-box 292 357 - -
Vifa5g00697 411 ProSiteProfiles Zinc finger ZZ-type profile. 298 362 IPR000433 GO:0008270
Vifa5g00697 411 FunFam E3 ubiquitin-protein ligase PRT1 292 357 - -
Vifa5g00697 411 ProSiteProfiles Zinc finger RING-type profile. 25 65 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00697 Vifa-Chr5 191009158 191014903 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00697 10 65 C3H Transcription Factor Family AT1G74990 36.842 5.28e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00697 - - tpra:123888067 706.827