Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00679 ATGGCAGAAGCAGCAACTTCTTCGATGAGAAAGACCAAAAGGAAGAACCGAAGCCTAAAAACTCAGGACCCTGAGCTCGACCGCCTGGAATCTCTTCCGTGGAACTCATCTCTCCCTCAACACGATGAACAAGACGACAACTCTTTTTCACTCTTCACTGGCTCCAATGAACTCGAAGGAGGTTTTCTTTCACTCGAGGAGATTGATGAAGCGGACTATGGTCTAAATATTCCCGATCCTGAAAATCATGACAGGAAACACAATTCTAATCAGAACAAGAAGTTAAATAAGCAGAAACAAGATAATACTTGTAGTGATGGAGAAACGGTGAATGATGAGAGCATCAAGTCTAAAGTAAAGAAAAAGAAAAAGAAGAAAAGCAAGGATGCAAAAGAAAACCAGAAAGTTCAGCATTCAAATACTGCCATAGATGCTGATGTGAAGGATGTTGTTGAGGAAGAGAGCATTGATGAAACTGAATATTATGCATGGAACGAGCTGAGGCTTCATCCTCTTTTAATGAATGCAATACACAAGTTGGGATTCAAGGAACCAACACCAATACAAAAAGCTTGTATTCCGGCTGCTGCTCATCAAGGAAAGGATGTTATCGGGGCTGCAGAGACTGGATCTGGTAAAACACTTGCATTTGGCTTGCCCATTTTGCAACGTCTTTTGGAGGAGCGTGAGAAGGCTGCAAATGTGGTCGGTGAAAAGGGAGAAGAAGCTGAAAAATACACTTCCACGGGCCTTTTAAGGAGTCTTATTATTGCTCCAACTAGAGAACTTGCACTTCAGGTCACTGATCATTTGAAAGCAGTAGCCAAGTATATTAATGTTCGGGTGACCCCTATAGTTGGGGGTATTTTAGCAGAAAAGCAGGAAAGACTTTTAAGAGCTAGGCCTGAGATTGTGGTTGGTACTCCAGGGAGGTTATGGGAACTTATGTCATCTGGAGAAAAGCATCTGGTTGAGTTACATTCGCTGTCTTTTTTTGTGCTTGATGAGGCTGACCGAATGGTACAAAATGGTCATTTTAAGGAGTTGCAATCAATAATTGACATGCTTCCCATTTCCAATATCTCCAGTGAAGATAATTCTCAAGATGCACAAAGTTGTGTTACAGTTTCTAGTGTCCAAAGAAAGAAAAGACAAACTCTTGTTTTCTCTGCAACTGTCGCACTATCTGCTGATTTTCGCAAGAAGCTAAAGCGTAGTTCAATTCAGAAAAAGCAACTATCGACAGATGGTTTGGATTCTATTGAAAATCTTTCTGAGCGAGCGGGAATGAGACCCAATGCAGCAATTATTGATCTTACCAATCCATCAATATTAGCAGCCAAGATTGAGGAGTCCTTTATTGAATGCACAGAAGATGATAAAGATGCCCATTTGTATTATATTCTCACTGTCCATGGACAAGGACGCACAATAGTTTTCTGTACTTCAATTGCAGCTTTGCGCCATATTTCTTCCATATTGCGCATTCTTGGTGTCAATGTTTGGACTCTTCATGCTCAAATGCAACAGCGAGCGCGTTTAAAGGCCATGGACCGCTTTCGTGAAAAGGAAAATGGCATACTTGTTGCCACAGATGTTGCTGCAAGAGGTCTTGATATTCCCGGTATTAAAACTGTTGTCCATTATCAGCTCCCACATTCAGCAGAGGTTTATGTTCATAGAAGTGGAAGAACAGCTAGGGCTTCTGCTGAAGGTTGTAGCATTGCTTTAATCTCCCCAAAAGATACATCGAAGTTTGCTTCATTGTGCAAGTCATTTTCAAAGGATACTTTTCAGCGGTTTCCTTTGGAGAACTCGTACATGCCAGAGATTCTAAAACGGTTGTCTCTTGCTCGTCAAATAGACAAGATAACAAGGAAAGATTCCCAGGAGAAGGCAGAAAAAAGCTGGTTTGATCGGAATGCTAGCTCAGTGGATTTAGTTACTGAAAATTATGACAGTGAGGAGGAACAAGTTAATAAACACAGGCAAAAGAAAGCCAGCTCTAAGAAATTGAAGAATTTGCAGACGGAACTCAGTACGCTGATTTCACTTCCTCTGCAATCAAAAACATTTTCACATCGATATTTAGCAGGGGCTGGTGTAACGCCCCTCATGCAGGAACAATTGCAACAATTATCTAGGCAAAAATTAAGTGATCGCCAGGGTGCAGTATTCGGCAAAAAGGGAAAATTGGTTGTGATTGGTCAAGATTGTGTGGACGCACTTCACGCACTTCGGAGTGCTGGTGAAGAGGTGCGCATGGATATCAAGGATTCAACGGGAAGACAAAGAAATGCAGTAAATTCTAAGAGAAAAAGAAAAGAGGAAAAGAGGAAAAGAAAAGGTTTGCGTGATCAGCGTAAAAAGAAGAAGAGAGATCTAAACCAGGACGATGAATAG 2403 0.4136 MAEAATSSMRKTKRKNRSLKTQDPELDRLESLPWNSSLPQHDEQDDNSFSLFTGSNELEGGFLSLEEIDEADYGLNIPDPENHDRKHNSNQNKKLNKQKQDNTCSDGETVNDESIKSKVKKKKKKKSKDAKENQKVQHSNTAIDADVKDVVEEESIDETEYYAWNELRLHPLLMNAIHKLGFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPILQRLLEEREKAANVVGEKGEEAEKYTSTGLLRSLIIAPTRELALQVTDHLKAVAKYINVRVTPIVGGILAEKQERLLRARPEIVVGTPGRLWELMSSGEKHLVELHSLSFFVLDEADRMVQNGHFKELQSIIDMLPISNISSEDNSQDAQSCVTVSSVQRKKRQTLVFSATVALSADFRKKLKRSSIQKKQLSTDGLDSIENLSERAGMRPNAAIIDLTNPSILAAKIEESFIECTEDDKDAHLYYILTVHGQGRTIVFCTSIAALRHISSILRILGVNVWTLHAQMQQRARLKAMDRFREKENGILVATDVAARGLDIPGIKTVVHYQLPHSAEVYVHRSGRTARASAEGCSIALISPKDTSKFASLCKSFSKDTFQRFPLENSYMPEILKRLSLARQIDKITRKDSQEKAEKSWFDRNASSVDLVTENYDSEEEQVNKHRQKKASSKKLKNLQTELSTLISLPLQSKTFSHRYLAGAGVTPLMQEQLQQLSRQKLSDRQGAVFGKKGKLVVIGQDCVDALHALRSAGEEVRMDIKDSTGRQRNAVNSKRKRKEEKRKRKGLRDQRKKKKRDLNQDDE 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00679 800 MobiDBLite consensus disorder prediction 73 141 - -
Vifa5g00679 800 MobiDBLite consensus disorder prediction 1 54 - -
Vifa5g00679 800 MobiDBLite consensus disorder prediction 757 800 - -
Vifa5g00679 800 SMART ultradead3 181 421 IPR014001 -
Vifa5g00679 800 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 194 411 IPR014001 -
Vifa5g00679 800 Coils Coil 2 22 - -
Vifa5g00679 800 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 162 190 IPR014014 GO:0003724
Vifa5g00679 800 MobiDBLite consensus disorder prediction 33 54 - -
Vifa5g00679 800 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 102 357 IPR027417 -
Vifa5g00679 800 MobiDBLite consensus disorder prediction 95 110 - -
Vifa5g00679 800 Pfam DEAD/DEAH box helicase 186 394 IPR011545 GO:0003676|GO:0005524
Vifa5g00679 800 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 333 341 IPR000629 -
Vifa5g00679 800 Coils Coil 645 665 - -
Vifa5g00679 800 MobiDBLite consensus disorder prediction 76 91 - -
Vifa5g00679 800 Coils Coil 767 794 - -
Vifa5g00679 800 PANTHER RNA HELICASE 118 759 - -
Vifa5g00679 800 MobiDBLite consensus disorder prediction 767 789 - -
Vifa5g00679 800 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 253 585 IPR027417 -
Vifa5g00679 800 SMART helicmild6 488 569 IPR001650 -
Vifa5g00679 800 CDD DEADc_DDX24 173 438 - -
Vifa5g00679 800 CDD SF2_C_DEAD 449 578 - -
Vifa5g00679 800 Gene3D - 446 685 IPR027417 -
Vifa5g00679 800 Pfam Helicase conserved C-terminal domain 460 568 IPR001650 -
Vifa5g00679 800 Gene3D - 113 411 IPR027417 -
Vifa5g00679 800 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 448 609 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00679 Vifa-Chr5 184220695 184228725 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00679 137 594 Eukaryotic Initiation Factors Gene Family AT1G72730 25.478 4.06e-39 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00679 K14805 - gmx:100806018 1217.22