Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00677 ATGGATTTAAGAGATTCATGGACTGTCTTCTTTCTGTTTTGTAGCTTCTTGGTTGTTGCTTTGTGTGGACAAGATGGTTTCTTGAGTCTATCATGTGGTGGAACAACAAGCTTCAATGATTCATCAAACATTTCATGGCACTCAGACACTCCTTACATAACCAATGGAAAAACAACCACCATCAATTACCGCGATGGTTCCTCGTCATCAAATGTCTCGGCTCGATTCTTCCCTCATTCCAGAGGTCACGCATGCTATCGGATACCAGTGAGCAATGCAACTAGTTTGATTCTTGTTAGAGCGAAATTTGTATACAAAAACTACGATGGACTTGAAAAACCGTCTATTTTCTATGTTTCTCTTGGGACAGCTATTGCTGCTAAGATAAATTTGGCCAAAAATGATCCATGGATAGAAGAGTTTCTCTGGGAAGTTAATAAGGATACATTGGTTTTCTGTTTGAATCCGATTCCAAGTGGTGGTTCTCCTGTAATTTCTTTACTCGAAATTAGGCCTCTTCCTAAAGGATCTTACACAAAGGGTAAAGAAGATTTCTCGAATAAATTACTTCGGATGAGTTATAGAATTGATTGTGGACACATCAATGAGTCTATAAGGTACCCTATCGATCCATATGATAGAATATGGAATGGTGATAGAAGTTTCATACCTTTTCATGATACAAGAGGGTTTAAGATTCATAATAGCTTCAATCAATCCAATATTGTGGAGAAACCGCCGTCTGCTGTTCTTCAAACTGGAAGAGTCTTGGCACGACGAAATACGATGGCATATAACCTCCCTCTTGAGGGATTAGGGGACTGCTACATCATCCTCTATTTCGCTGGAATTCTTCCTGCGTTTTCCTCATTTGACGTGTTCATAAATGGAGATATTGTAAAGTCAAACTATACAATAAATAGATCAGAAATCAGTGCTTTATATATTACTAGAAAGAGGATCAACAACTTGAATATAACACTAAGAAGCGTCAACTTCGACCCTCAGATCAATGCATTCGAGGTATATAATATGGTTGATATTCCGCCTGAAGCCTCCTCAACCACAGTTTCAGCAATGCAGGTTATTCAGCAGTCGACTGGCTTGTATCTAGGATGGCAAGATGATCCATGCTCCCCTTTTCCATGGGATCACATAGATTGTGAAGGAAACTTAGTTACATCATTGACTCTCTCAGACATAAATTTGAGATCAATTAGTCCAACATTTGGTGACTTGTTGGACCTTAAAACATTGGATTTGCACAACACGTCACTTGCTGGCGAAATCCAGAATTTGGGTAGCTTGCAAAGTCTTGCAAAATTGAACCTTAGTTTCAATCAGCTGACATCCTTTGGTGTAGAGCTGGAAAACTTGATAAGACTTCAAATTTTAGATTTGCAAAGTAATAGTCTCTCCGGATCAGTGCCGGATAGCTTGGGAGAGATAGAAAACCTCCACTTACTGAATCTAGAAAACAACAAACTACAAGGTCCACTTCCACAGGCTTTGAACAAAGACACTATAGAGATCAGAACATCTGGAAATTTGTGCCTTACTTTTTCCACAGCCGTGTGCGATGATGCATCATCCAATCCTCCTTCAATTGAGGCACCGCAACTGATTACAGTTCCCGGAAGGAAGAACCATGGACAAAACCATCTAGCAATAATACTTGGCACAGTTGGAGGAGCTGCGCTTACCATTTTCCTAATATGTCTTTCAGTATTTATATACAAAGCTAAAAGAAGATATGAAGCCTTACACAAAACTAGGGAAGAAACTCATGTCAGGAACTGGGGTGCAGAAAAAGTATTTACCTACAAAGAAATCAAAGTAGCTACTAGCAGTTTTAAGGAAATCATAGGAAGAGGAAGTTTTGGATCTGTTTACCTTGGAAAGCTTCCAAACGGAAAATCAGTTGCTGTCAAAGTTCGGTTCGATAAATCCCAACTCGGGGTTGATTCTTTTATCAATGAGATTCATCTCCTGTCAAAAATCCGCCATCAAAATCTCGTGTCTTTGGAAGGATTTTGTCATGAATCAAAGCATCAGATATTGGTTTATGAATACTTGCCGGGTGGATCCCTGGCTGATCACCTCTACGGTGCAAACAGCTATAAAACTCCCTTAAGCTGGATGCGAAGGTTGAAAATTGCTGTCGATGCAGCAAAAGGATTGGATTATTTGCATAACGGAAGTGAACCGAGAATCATACACCGTGATATCAAGTGTAGTAACATCCTCTTGGACGTAGATTTGAATGCCAAGGTCTGTGATTTCGGTCTCTCTAAGCAGGTAACCAAAGCAGATGCAACTCATGTCACCACTGTCGTCAAGGGAACTGCTGGTTATCTAGACCCGGAGTATTATTCTACTCAACAGCTTACTGAGAAAAGTGATGTATATAGCTTCGGAGTTGTTCTATTGGAACTCATTTGTGGAAGAGAACCATTGATTCACTCGGGGACTCCTGATTCATTCAATTTGGTTTTATGGGCAAAACCCTATTTACAGGCGCGTGCGTTTGAAATTGTGGACGAAAGAATACAAGGAACTTTTAATCTAGAGAGCATGAAGAAGGCAGCCTCTATAGCTGTGAATTCTGTGGAAAGAGATGCATCACAGAGACCACCTATTGCTGAAGTATTAGCAGAGCTAAAGGAAGCTTATGATATTCAGCTCATATTTTCGGAGTCATGTGAAAATGAGAATTGA 2718 0.3996 MDLRDSWTVFFLFCSFLVVALCGQDGFLSLSCGGTTSFNDSSNISWHSDTPYITNGKTTTINYRDGSSSSNVSARFFPHSRGHACYRIPVSNATSLILVRAKFVYKNYDGLEKPSIFYVSLGTAIAAKINLAKNDPWIEEFLWEVNKDTLVFCLNPIPSGGSPVISLLEIRPLPKGSYTKGKEDFSNKLLRMSYRIDCGHINESIRYPIDPYDRIWNGDRSFIPFHDTRGFKIHNSFNQSNIVEKPPSAVLQTGRVLARRNTMAYNLPLEGLGDCYIILYFAGILPAFSSFDVFINGDIVKSNYTINRSEISALYITRKRINNLNITLRSVNFDPQINAFEVYNMVDIPPEASSTTVSAMQVIQQSTGLYLGWQDDPCSPFPWDHIDCEGNLVTSLTLSDINLRSISPTFGDLLDLKTLDLHNTSLAGEIQNLGSLQSLAKLNLSFNQLTSFGVELENLIRLQILDLQSNSLSGSVPDSLGEIENLHLLNLENNKLQGPLPQALNKDTIEIRTSGNLCLTFSTAVCDDASSNPPSIEAPQLITVPGRKNHGQNHLAIILGTVGGAALTIFLICLSVFIYKAKRRYEALHKTREETHVRNWGAEKVFTYKEIKVATSSFKEIIGRGSFGSVYLGKLPNGKSVAVKVRFDKSQLGVDSFINEIHLLSKIRHQNLVSLEGFCHESKHQILVYEYLPGGSLADHLYGANSYKTPLSWMRRLKIAVDAAKGLDYLHNGSEPRIIHRDIKCSNILLDVDLNAKVCDFGLSKQVTKADATHVTTVVKGTAGYLDPEYYSTQQLTEKSDVYSFGVVLLELICGREPLIHSGTPDSFNLVLWAKPYLQARAFEIVDERIQGTFNLESMKKAASIAVNSVERDASQRPPIAEVLAELKEAYDIQLIFSESCENEN 905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00677 905 SMART serkin_6 616 891 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g00677 905 SUPERFAMILY Protein kinase-like (PK-like) 598 887 IPR011009 -
Vifa5g00677 905 ProSitePatterns Protein kinases ATP-binding region signature. 622 644 IPR017441 GO:0005524
Vifa5g00677 905 Pfam Protein tyrosine and serine/threonine kinase 618 886 IPR001245 GO:0004672|GO:0006468
Vifa5g00677 905 PANTHER OS07G0107800 PROTEIN-RELATED 455 891 - -
Vifa5g00677 905 Gene3D Phosphorylase Kinase; domain 1 579 691 - -
Vifa5g00677 905 ProSiteProfiles Protein kinase domain profile. 616 891 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g00677 905 Gene3D - 190 346 - -
Vifa5g00677 905 SUPERFAMILY L domain-like 358 506 - -
Vifa5g00677 905 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 692 898 - -
Vifa5g00677 905 Gene3D Ribonuclease Inhibitor 355 528 IPR032675 -
Vifa5g00677 905 FunFam serine/threonine-protein kinase PBS1-like 584 691 - -
Vifa5g00677 905 Gene3D Transferase(Phosphotransferase) domain 1 692 901 - -
Vifa5g00677 905 FunFam Leucine-rich repeat receptor protein kinase EMS1 406 503 - -
Vifa5g00677 905 ProSitePatterns Serine/Threonine protein kinases active-site signature. 738 750 IPR008271 GO:0004672|GO:0006468
Vifa5g00677 905 ProSiteProfiles Leucine-rich repeat profile. 438 460 IPR001611 GO:0005515
Vifa5g00677 905 CDD STKc_IRAK 622 889 - -
Vifa5g00677 905 Pfam Malectin-like domain 30 344 IPR024788 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00677 Vifa-Chr5 184188418 184192854 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00677 10 897 Receptor kinase-like Gene Family AT5G48740 61.867 0.0 1076
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Vifa5g00677 Malectin_like 4.5e-51 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00677 - - aprc:113850446 1425.22