Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00675 ATGAATGATTCAAAGTTACAGTTTTGGGAAGCATTAGACAACTGTGTTGGTACAGACACCATCACATCATCTCAATATATCAAGATCAAAGACCATGAAACTCTAGTCTCTAAAGATGGTAACTTCACCTTGGGAGTTTTTAGCCCTAAAAACTCTACAAAACGATACGTTGGAATTTGGTGGAGGCTTCAATCTACAGTCATATGGGTGGCAAACAGAAACCAACCACTAAATGATTCTAATGGGATTATCACAATATCTGAAGATGGAAATCTTGTGATATTAAATGGACAAGAACAAGTCATTTGGACATCAAATGTTTCCAACATAGCATCCAATACAAGGTCTGAGTTTTCAGACTTTGGTAACCTCGTTCTTTTGGATAGCCGAACCAGGAACGTCCTATGGCAGAGTATTCAGCATCCTTCAGATACATTACTGCCTAGCATGAAACTTTCAACCAACAAAAGAACAGGTACGAGTATAAAAATCAATTCATGGAAAAGCCCTACTGATCCAACCTTGGGAAACTTCTTTTGTAGTACTGTTGAACGCCTACATATAATTGAAGTGTTCATTTGGAATGGAACTCAGCCATATTGGCGCAGTGGTCCCTGGAATGGCAGGGTCTTCACTGGAATACAAACAATGACAGTTGAATATTTTTTTGGTTTTCAAGGAGGAGATGATGGTGAAGGGAATATTAACATATATTTTACTATACCAGATGATGAGAATTTTTGGATCTATCGCCTGAATTCACAAGGAAAATTAGAAGAAACGGGGTGGGATGATGAAAAGAAAGAAATGCGAGTTACATGGACAAGCCGGGAATCCGAGTGTGATGTATACGGTATATGTGGGGCATTTGCAAGCTGTAATTCATTGAGTTCCCCAATATGTAGCTGTTTGAGAGGGTTTGAGCCCAGAAACATAAAAGAATGGAATACACATAACTGGGCTGCCGGCTGTGTTAGGAGGACACCTTTGCAGTGTGAAAGGGTCATCAATAAAACCGCAAGTGCAAAGCAAGACGGGTTTTTGAAATTGCAAAACGTTAAAGTTCCAGATTTTGCACAAGGTTTAGCTGTTCCACCAGAAGCGTGCATAAACTTATGCTTGAGTAATTGCTCTTGCATTGCATACTCTTTCGCGGATGAGATTGGTTGTATGTCTTGGACCGGCAATCTACTTGACATACAGCAACTCCAAGATGGAGGACTTGATCTATATGTTCGCGCAGCCTATGCAGAACTTGATCAAGAGAGAAACAAGACAATTGATCAACAGGAAGAGATAAACATGACAAAGGATCAAGAAAAAGAGAGAAAGAAGAAAATCATCATAAGTACAGTGATAATTGGAACTTTCATAATTGTCATTTGTGCATATATCTTGTGGAGAAGGACATCAAACCAACCAGCTAAACGGTGGCTCCTTACTAAATCGGCAAGGAAAAAGAACAACAAAGCTTTCCAACTATTTAATAAAGGTAGATTACCAGAAGGTTATGCTAGTGACAATGTAATTGGAGAAATGTCCCAAGTTAAACTACAAGAGCTATTAATGTTTGATTTTGAAAAGCTTGCATCTGCAACAGACAACTTCCACTTATCCAACAAGCTTGGACAAGGTGGTTTTGGTTCAGTATACAAGGGGAAACTGGAAGATGGTCGAGAAATAGCAGTTAAAAGACTTTCTAGAGCATCTGGACAAGGGCTGGAGGAATTCATGAATGAAGTAGTTTTGATTTGTAAGCTTCAACATCGCAATCTTGTAAGACTTATTGGTTGCTGTACTGAAGGTGATGAAAAGATGTTGATATATGAGTACATGCCCAACAAAAGTTTAGATGCATTCATCTTTGATCCATCAAAAAATAATCTCTTAAATTGGATCACACGGTATAGCATAATAGAAGGAATAGCTCGAGGATTGCTATATCTTCATAGAGATTCTAGACTAAAAATTATTCATAGAGATTTGAAGGCAAGTAATGTCTTGTTAGACGAGGAGCTGAATCCAAAAATATCTGACTTTGGTATGGCTAGAATCTTTGGAGGGGGAGTAGATCAGGCCAATACTAACAGGATTGTTGGAACCTATGGTTATATGTCTCCTGAATATGCAATGCAAGGATTGTTTTCGGAGAAATCAGATGTTTTTAGCTTTGGTGTTTTGTTACTAGAGATTCTTATGGGGAGAAGGAACTCTAGTTTTTGTGACAATGAGCACTCACTAAGCCTTTTAGGATTTGTTTGGATTCAATGGAGGGACAACAATATTTTATCTCTAATAGATCGAGAAATATATGATCCTAGTCATCACAGTTACATTTTAAGGTATATACATATAGCACTTTTGTGTGTACAAGAACTTGCTGTAGATAGGCCTACTATGGCTGCAGTAATTTCTATGCTTAACAGTGAAGCTGCATTACATCCTCCTAGTAAACCCGCATTCATCCTGATGGAGAATATGTTGAACTTAAAGAGGCCTGAAGAATGTCAAAGTGTTAGTTCCATCAATAATGTCAGTATTACAGAAATCTGTGGCAGATAG 2562 0.3817 MNDSKLQFWEALDNCVGTDTITSSQYIKIKDHETLVSKDGNFTLGVFSPKNSTKRYVGIWWRLQSTVIWVANRNQPLNDSNGIITISEDGNLVILNGQEQVIWTSNVSNIASNTRSEFSDFGNLVLLDSRTRNVLWQSIQHPSDTLLPSMKLSTNKRTGTSIKINSWKSPTDPTLGNFFCSTVERLHIIEVFIWNGTQPYWRSGPWNGRVFTGIQTMTVEYFFGFQGGDDGEGNINIYFTIPDDENFWIYRLNSQGKLEETGWDDEKKEMRVTWTSRESECDVYGICGAFASCNSLSSPICSCLRGFEPRNIKEWNTHNWAAGCVRRTPLQCERVINKTASAKQDGFLKLQNVKVPDFAQGLAVPPEACINLCLSNCSCIAYSFADEIGCMSWTGNLLDIQQLQDGGLDLYVRAAYAELDQERNKTIDQQEEINMTKDQEKERKKKIIISTVIIGTFIIVICAYILWRRTSNQPAKRWLLTKSARKKNNKAFQLFNKGRLPEGYASDNVIGEMSQVKLQELLMFDFEKLASATDNFHLSNKLGQGGFGSVYKGKLEDGREIAVKRLSRASGQGLEEFMNEVVLICKLQHRNLVRLIGCCTEGDEKMLIYEYMPNKSLDAFIFDPSKNNLLNWITRYSIIEGIARGLLYLHRDSRLKIIHRDLKASNVLLDEELNPKISDFGMARIFGGGVDQANTNRIVGTYGYMSPEYAMQGLFSEKSDVFSFGVLLLEILMGRRNSSFCDNEHSLSLLGFVWIQWRDNNILSLIDREIYDPSHHSYILRYIHIALLCVQELAVDRPTMAAVISMLNSEAALHPPSKPAFILMENMLNLKRPEECQSVSSINNVSITEICGR 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00675 853 ProSitePatterns Protein kinases ATP-binding region signature. 542 564 IPR017441 GO:0005524
Vifa5g00675 853 Pfam Protein tyrosine and serine/threonine kinase 537 807 IPR001245 GO:0004672|GO:0006468
Vifa5g00675 853 CDD PAN_AP_plant 328 413 - -
Vifa5g00675 853 CDD STKc_IRAK 542 808 - -
Vifa5g00675 853 Gene3D - 15 140 IPR036426 -
Vifa5g00675 853 ProSiteProfiles Bulb-type lectin domain profile. 20 139 IPR001480 -
Vifa5g00675 853 Pfam D-mannose binding lectin 66 168 IPR001480 -
Vifa5g00675 853 SMART blect_4 26 142 IPR001480 -
Vifa5g00675 853 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 504 611 - -
Vifa5g00675 853 ProSiteProfiles Protein kinase domain profile. 536 817 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g00675 853 Gene3D Phosphorylase Kinase; domain 1 487 611 - -
Vifa5g00675 853 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 14 139 - -
Vifa5g00675 853 Gene3D Transferase(Phosphotransferase) domain 1 612 815 - -
Vifa5g00675 853 SUPERFAMILY Protein kinase-like (PK-like) 521 816 IPR011009 -
Vifa5g00675 853 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 18 798 - -
Vifa5g00675 853 SUPERFAMILY alpha-D-mannose-specific plant lectins 57 173 IPR036426 -
Vifa5g00675 853 Pfam PAN-like domain 342 400 IPR003609 -
Vifa5g00675 853 SMART ntp_6 342 414 IPR003609 -
Vifa5g00675 853 PIRSF SRK 4 853 IPR024171 GO:0004674
Vifa5g00675 853 ProSiteProfiles PAN/Apple domain profile. 332 415 IPR003609 -
Vifa5g00675 853 SMART serkin_6 536 779 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g00675 853 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 612 815 - -
Vifa5g00675 853 Pfam S-locus glycoprotein domain 201 310 IPR000858 GO:0048544
Vifa5g00675 853 CDD B_lectin 29 142 IPR001480 -
Vifa5g00675 853 ProSitePatterns Serine/Threonine protein kinases active-site signature. 657 669 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00675 Vifa-Chr5 182813651 182817113 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00675 515 853 Receptor kinase-like Gene Family AT4G11530 56.936 3.17e-123 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa5g00675 PK_Tyr_Ser-Thr 1.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00675 - - tpra:123892366 1313.13