Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00672 ATGCAAGATAATCTGATTGATCTTCTCAGTCATGACAATATTCTCATGGATGCTTCTCTATGGACCTTTACAGGTGGAAGCTTGAGCACAGTTGAAACATTGGCATCAACTGCTATTTGTGGAATTATCCACTCAATATTTGGTGGTCAACCTTTGTTAATTGTAGGAGTTGCTGAACCAACTTGTCTCATGTACACCTATCTATACAATTTTTGCGCAAAAACACCAGAGTTAGGTGCTCAGCTTTTCTTGGCTTGGGCTGCTTGGTTTACTAGGATTGCAGAAGAATTATTTGGCATGCTAATTACTGTGCTTTTCTTTCAACAGGCTGTAGAGGGACTCCTAACTGAGTTCAAGACACCAAAGGCTGCAGATCCCTTGTTAGAGGAATATCAATTTCATTGGCGCAAGAAAATGGCGATACGGAACAGGGGGCATACGAGCCTTGGCAAAGTTCCACCTACTGTTCCTAGAAGGTTGTTTTGTCCACTTCCTTGGGATCCTGCATCTTTCTACCATTGGACAATAATGAAGGATATGGTAAATGTACCATTGCTGTATATCTACGGAGCATTTATTCCGGCAATGATGATAGCAGGTTTATACTTTTTTGATCATAGTGTAGCTTCCAAGATGGCTCAACAGAAGGAGTTCAACCTTCAAAAACCATCTGCATACCACTATGATGTTTTTCTCCTTGGAATAATGACTTTGATTTGCGGTCTTCTCGGTCTTCCTCCATCAAATGGAGTCCTTCCTCAGTCTCCTATGCATACAAAGAGTTTAGCAATTCTTCGGAGGCAGATGATTCGAAATAAGGTGGTGAAAGGTGCCAAGGAATGCATTAGGCACCAAGGGACGAACGCTGAATTATACGGAACGATGCGCTCCGTTTTCATAGAAATGGATGCAGTGCCCACGGCTAGAGAGTTGGAGAATTTGAAGGATGCTGTAATGAATACTAATCCTGGTACAAAGGAAAAGTTTGATCCTGTAAAACATATAGATGCGTATTTGCCTGTTCGAGTTAACGAGCAAAGATTGAGCAACTTATTGCAATCTGTCTTTGTTGCCTTATTACTATTAGCTACATCTCTTATCAAAAGGATACCTACCTCAGTTCTTTGGGGATATTTTGCTTACATGGCAATTGATAGTCTTCCAGGGAATCAATTTTTTGAGAGAATTTTGCTTCTTTTCATCACCCCGAAAAGGCAGTACAAAGTTTTGGAAGGCACTCATTCGTCGTTTGTGGAGTCAGTACCATTCAAGACAATAGTTGGATTTACAGCTTTACAGCTTCTATACTTTTTTCTGTGCTATGGTTTAACATGGATACCTATTGGTGGAATATTGTTTCCAGTACCTTTCTTCCTTCTCATAATGCTAAGAGAGAAACTGCTTCCAAGATTATTCAAGGCAAGCCATCTTCAGGAGTTAGATGCTTTTGTTAAACATCGTCCGGCCAAATATTCTTTTTGTATAAAACAAGATGATTGGGATAAATTTGTAGCCCAACATATGACTGCAAAGTTTCAGTTAGTGATGAGAATCGAGAAAGTAGCTGAGAGTCGACTACCTAGTGATAAAGGTTCTTGCAACCCTGGATCATTTGGCAACATTCCCGAGGTAATTGGTTCTTGCAACCCTGGATCATTTGGCAACATTCTATGA 1674 0.4032 MQDNLIDLLSHDNILMDASLWTFTGGSLSTVETLASTAICGIIHSIFGGQPLLIVGVAEPTCLMYTYLYNFCAKTPELGAQLFLAWAAWFTRIAEELFGMLITVLFFQQAVEGLLTEFKTPKAADPLLEEYQFHWRKKMAIRNRGHTSLGKVPPTVPRRLFCPLPWDPASFYHWTIMKDMVNVPLLYIYGAFIPAMMIAGLYFFDHSVASKMAQQKEFNLQKPSAYHYDVFLLGIMTLICGLLGLPPSNGVLPQSPMHTKSLAILRRQMIRNKVVKGAKECIRHQGTNAELYGTMRSVFIEMDAVPTARELENLKDAVMNTNPGTKEKFDPVKHIDAYLPVRVNEQRLSNLLQSVFVALLLLATSLIKRIPTSVLWGYFAYMAIDSLPGNQFFERILLLFITPKRQYKVLEGTHSSFVESVPFKTIVGFTALQLLYFFLCYGLTWIPIGGILFPVPFFLLIMLREKLLPRLFKASHLQELDAFVKHRPAKYSFCIKQDDWDKFVAQHMTAKFQLVMRIEKVAESRLPSDKGSCNPGSFGNIPEVIGSCNPGSFGNIL 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00672 557 PANTHER ANION EXCHANGE PROTEIN 24 89 IPR003020 GO:0005452|GO:0006820|GO:0016020
Vifa5g00672 557 Pfam HCO3- transporter family 174 268 IPR011531 GO:0006820|GO:0016020
Vifa5g00672 557 Pfam HCO3- transporter family 23 74 IPR011531 GO:0006820|GO:0016020
Vifa5g00672 557 Pfam HCO3- transporter family 341 431 IPR011531 GO:0006820|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00672 Vifa-Chr5 182430677 182433719 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00672 24 482 Antiporters AT5G25430 59.065 0.0 615
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00672 K24194 - gmx:100792745 674.855